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9 protocols using tnf α clone mab11

1

Multiparameter Flow Cytometry for Cellular Phenotyping

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The following fluorophore conjugated monoclonal antibodies were used: CD3 (clone SP34-2), CD4 (clone L200), CD95 (clone DX2), Ki67 (clone B56), CD16 (clone 3G8), γδ TCR (clone B1), IFN-© (clone B27), TNFα (clone Mab11) (BD Biosciences), Perforin (clone Pf-344) (Mabtech), CD107a (clone eBioH4A3), CD28 (clone CD28.2); CD8 (clone 3B5) and Granzyme B (clone GB12; Life Technologies). Briefly, lymphocyte single cell suspensions were washed with PBS supplemented with 0.2% heat-inactivated human serum (Sigma), and incubated with different cocktails of fluorophore-labelled monoclonal antibodies during 20 minutes at room temperature [73 (link)], fixed and permeabilized using the FoxP3 permeabilization reagent (eBioscience). After 30 minutes incubation at 4°C, the cells were washed with FoxP3 washing buffer and intracellularly stained with Ki67 and GrzB for 20 minutes. The cells were washed and resuspended in PBS for flow cytometry analysis. For tetramer staining using samples from MamuA*01+ macaques, the CM9 tetramer was added to the samples 5 minutes prior to the addition of the antibody cocktail for surface staining [73 (link)]. The samples were acquired on a Fortessa or LSRII flow cytometer (BD Biosciences, San Jose, CA) and the data were analyzed using the FlowJo software platform (Tree Star, Inc., Ashland, OR).
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2

PBMC Cytokine Response Assay

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A total of 2 to 4 × 106 human PBMCs expanded with specific Immuno-STAT or peptide were pretreated with brefeldin A (BFA) and monensin (ThermoFisher), plated in a 24-well plate, and stimulated at a 1:1 ratio with T2 cells (ATCC) that had been loaded with CMV pp65495–503 (NLVPMVATV) or Mart126–35 (ELAGIGILTV) or HIV-1 p17 Gag77–85 (SLYNTVATL; SL9) peptide for 2 h and washed twice. Cells were stimulated for 5 h, washed, stained with Fixed Viability Stain 780 (BD Biosciences), antibodies against CD3 (clone SK7, BioLegend), CD8 (clone SK1, BD Biosciences) and CD107a (clone H4A3, BD Biosciences), and fixed using IC fixation buffer (ThermoFisher). Cells were next washed in permeabilization buffer (eBioscience), stained with antibodies against TNF-α (clone MAb11, BD Biosciences), IFN-γ (clone 4S.B3, BioLegend), and granzyme B (clone GB11, BD Biosciences) for 30 min at room temperature, washed, and analyzed. For representative FACS plots and pairwise marker quantitation, PBMC were stimulated as described above using T2 cells loaded with 100 nM peptide. For peptide titration studies, PBMC were stimulated as described above using T2 cells loaded with 1 × 10–13, 1 × 10–12, 1 × 10–11, 1 × 10–10, 1 × 10–9, 1 × 10–8, 1 × 10–7, 1 × 10–6, or 1 × 10–5 g/ml peptide.
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3

Evaluating Budesonide Effects on PBMC

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Peripheral blood mononuclear cells (PBMC) isolated from healthy donors were cultured with 1 μg/mL each of anti–CD3 (clone HIT3a) and anti–CD28 antibodies (clone CD28.2) in RPMI-1640 media containing 10% FBS and penicillin-streptomycin (1 μg/mL each). The cells (0.5 × 106 cells per well in a 24-well plate) were treated daily with 10 μL of PBS, 20% polymer solution, BL, or BPL (for a final budesonide concentration of 2 μg/mL).3 After 48 h, the cells were washed and activated with PMA and ionomycin in the presence of Brefeldin A at 37 °C for 4 h. Expression of TNF-α (clone MAb11; BD Biosciences) was assessed by flow cytometry using the Fortessa (BD Biosciences).
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4

Multi-color Immunophenotyping of Cells

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Cells were surface stained with anti-human antibodies (Abs) to CD11b (clone ICRF44), CD14 (clone TuK4), CD31 (clone M89D3), CD45 (clone 2D1), CD163 (clone GHI/61), IL-6 (clone MQ2-39C3), TNF-α (clone MAb11), vimentin (clone RV202) (BD Pharmingen, San Diego, CA), IL-8 (clone E8N1), CD326 (EpCAM, clone 9C4) (Biolegend, San Diego, CA), and CD3 (clone UCHT1, Beckman-Coulter, Miami, FL). Antibodies conjugated to the following fluorochromes were used in these studies: Fluorescein isothiocyanate (FITC), Phycoerythrin (PE), Peridinin chlorophyll protein (PerCP)-Cy5.5, PE-Cy7, Energy Coupled Dye or PE-Texas-Red conjugate (ECD), Pacific Blue, Brilliant Violet (BV) 570, BV605, BV650, Quantum dot (QD) 800, Alexa 647, allophycocyanin (APC)-Alexa 700 and APC-H7.
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5

Cytokine Production Assay of TILs

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A total of 2×105 TILs were cultured with 2×105 cells from tumor digest or tumor cell lines, in the presence of 1 µL/mL Golgiplug (BD Biosciences). After 5 hours of incubation, cells were stained using anti-CD8 antibody (clone SKI, BD Biosciences) and live/dead marker (Fixable Violet Dead Cell Stain Kit, (Invitrogen)). Intracellular cytokine production was detected after fixation and permeabilization with the Cytofix/Cytoperm kit (BD Biosciences) and antibodies against interferon-γ (IFN-γ) (clone B27), IL-2 (clone Mq1-17H12), and tumor necrosis factor α (TNF-α) (clone Mab11), all from BD Biosciences. Cells were analyzed on an LSR2 SORP flow cytometer and data were processed using Flowjo_V10 software.
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6

Multiparameter Flow Cytometry of Salmonella Infection

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Cells were stained with mAbs to CD3 (clone UCHT1), CD69 (clone TPI-55-3) (Beckman-Coulter, Miami, FL), CD8 (clone HIT8a), CD161 (clone DX12), IL-10 (clone JES3-9D7), interferon (IFN)-γ (clone B27), tumor necrosis factor (TNF)-α (clone MAb11) (BD Pharmingen, San Diego, CA, USA), CD14 (clone TuK4), CD45 (clone H130) (Invitrogen, Carlsbad, CA), and HLA-G (clone 87G), CD85j (ILT2) (clone GHI/75), and TCRα7.2 (clone 3C10)(Biolegend, San Diego, CA). Polyclonal antibody to the Salmonella Common Structural Antigens (CSA) (KPL, Gaithersburg, MD, USA) was used to measure S. Typhi infection. Antibodies conjugated to the following fluorochromes were used in these studies: Fluorescein isothiocyanate (FITC), Phycoerythrin (PE), PE-Cy5, Peridinin chlorophyll protein (PerCP)-Cy5.5, PE-Cy7, Pacific Blue, Brilliant Violet (BV) 570, BV605, BV650, Quantum dot (QD) 800, Alexa 647, allophycocyanin (APC)-Alexa 700, or APC-H7.
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7

Cytokine Analysis of Activated T-cells

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Patient PBMCs were cultured for 7 days as described above and stained for intracellular cytokines. Briefly, presensitized cells were first restimulated with T-depleted APCs pulsed with various peptides and then treated with GolgiPlug (BD Biosciences). Cells were then stained with anti-CD3, anti-CD4, and anti-CD8 mAbs, fixed, and permeabilized followed by staining with fluorochrome-conjugated antibodies to IFN-γ (clone B27) and TNF-α (clone mAb 11) (BD Biosciences). Stained cells were then analyzed by flow cytometry with FACSCanto II (BD Biosciences).
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8

Multicolor flow cytometry panel

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Cells were stained with monoclonal antibodies (mAbs) to CD69 (clone TPI-55-3) (Beckman-Coulter, Miami, FL), CD4 (clone RPA-T4), CD8 (clone HIT8a), CD107a and b (clones H4A3 and H4B4 respectively), interferon (IFN)-γ (clone B27), tumor necrosis factor (TNF)-α (clone MAb11) (BD Pharmingen, San Diego, CA, USA), CD14 (clone TuK4), CD19 (clone SJ25-C1), CD45 (clone H130) (Invitrogen), interleukin (IL)-17A (clone eBio64DEC17) (eBioscience, San Diego, CA), and CD3 (clone OKT3)(Biolegend, San Diego, CA). Antibodies conjugated to the following fluorochromes were used in these studies: Fluorescein isothiocyanate (FITC), PE-Cy5.5, PE-Cy7, V450, Brilliant Violet (BV)570, BV650, Energy Coupled Dye or PE-Texas-Red conjugate (ECD), allophycocyanin (APC)-Alexa 700 and Quantum Dot (QD) 800.
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9

Evaluating T-cell Responses to Transgenic Pig Cells

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Fresh PBMCs from NHPs (100,000cells/100μL) were labeled with Cell Trace Violet (CTV) and incubated with either irradiated PBMCs from αGal knockout/CD55 transgenic pigs (100,000cells/100μL) for four days in R10 media, 37°C, 5% CO2. Cells were labeled with CD3, CD4, CD8, CCR7, and CD45RA (clones listed above). Preliminary studies demonstrated that an incubation time of four days was optimal for proliferation against stimulators from these particular transgenic cells (data not shown). Cells were then re-stimulated ex vivo with Phorbol 12-myristate 13-acetate (PMA) (30ng/mL) and Ionomycin (400ng/mL) (Sigma Aldrich, St Louis, MO) for four hours and stained intracellularly for IL-2 (anti-human IL-2, Biolegend), IFNγ (clone B27, BD Biosciences, San Jose, CA) and TNFα (clone MAB11, BD Biosciences, San Jose, CA). Mixed lymphocyte reactions and stimulation assays were performed with either 5c8 (100μg/mL) or no drug.
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