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15 protocols using papain

1

Quantifying Proteoglycan Content in Disc Samples

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NP samples were isolated from discs at each level at 6 months after surgery (n = 6). The PG content was quantified using the 1,9-dimethylmethylene blue DMMB assay [38 ,39 (link)]. Briefly, each lyophilized sample was digested with 125 μg/mL of papain (Sangon Inc., Shanghai; PRC) in sterile PBS, 5 mM of EDTA, and 5 mM of cysteine·HCl at pH 6.8 and 60°C overnight. After complete digestion, 20 μL of the papain digest was added to 200 μL of DMMB reagent (Sigma-Aldrich, St. Louis, Missouri, USA), and absorbance was detected at 520 nm. A Quant-iT™ PicoGreen® dsDNA Assay Kit (Invitrogen™) was used to determine DNA content in the discs, according to the manufacturer’s protocol (Thermo Fisher Scientific Inc., Waltham, MA; USA). The total sGAG in the disc for each group was normalized according to the tested amount of DNA, and the sGAG/DNA ratio was measured and reported.
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2

Quantification of GAG Content in NP Cells

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Glycosaminoglycan (GAG) content of the cultured NP cells was quantitated by 1,9-dimethyl methylene blue (DMMB) assay as described in a previous study [23 (link)]. Briefly, the cultured NP cells were collected and digested by 5 mg/ml papain (Sangon, Biotech Co., Ltd., China) for 6 h at 60°C. Then, the GAG content in the digested solution was calculated according to the absorbance value at 525 nm. Additionally, the shark cartilage chondroitin sulphate (Sigma, U.S.A.) was used as a standard in the DMMB assay.
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3

Isolating Primary Cortical Neurons from Mice

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Primary cortical neurons were isolated from postnatal Day 0 C57BL/6 J mouse pups as described previously [18 (link)]. Briefly, mouse cortices were dissected in ice-cold DMEM and then dissociated into single-cell suspensions by treatment with papain (A501612-0025; Sangon Biotech, Shanghai, China). After dissociation, the neurons were seeded on poly-L-lysine-coated dishes (E607015; Sangon Biotech). After 6–8 h, plating medium (DMEM supplemented with 10% horse serum (E510006-0100; Sangon Biotech), 1% glutamax (35,050,061; Gibco, Grand Island, NY, USA) and 1% penicillin/streptomycin) was replaced with Neurobasal medium (T710KJ; BasalMedia Technologies Co., Ltd., Shanghai, China) containing 2% B27 supplement (S440J7; BasalMedia Technologies) and 1% glutamax. Neurons were grown in vitro for 7 days, with the medium changed every 3 days. Primary cortical neurons were pretreated with 5 μg/ml PFF for 5 days and then treated with 50% PFF MCM for 24 h.
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4

Protease Inhibition Assay with SPINK7

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Assay for inhibitory activity against protease was performed as previously described with modification (23 (link)–27 (link)). Trypsin, α-chymotyrpsin, pronase, subtilisin, thrombin were purchased from Sigma-Aldrich (St. Louis, USA), and proteinase K and papain were purchased from Sangon Biotech (Shanghai, China). SPINK7 (100 μg) was preincubated with 10 μg protease in 100 μL Fluoro assay buffer (100 mM Tris-HCl and 20 mM CaCl2, pH 7.5) for 30 min at 37°C. Then, 100 μL FITC-casein substrate buffer (G-Biosciences, USA) was added and incubated at 37°C in the dark for 1 h. The fluorescence was measured at 485/535 nm (excitation/emission). Protease inhibition by SPINK7 was assessed using the following formula: % residual activity = (residual enzyme activity/enzyme activity without inhibitor) × 100. Three independent replicates were performed for each experiment. Student’s t test was used to evaluate statistical significance. These data were analyzed by GraphPad Prism 5 software.
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5

DMMB Assay for Glycosaminoglycan Quantification

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The 1,9-dimethylmethyleneblue (DMMB) assay was applied to measure the glycosaminoglycan (GAG) content of the cultured NP cells as described in a previous report [26 (link)]. Briefly, the NP cells were collected and digested by 5 mg/ml papain (Sangon, Biotech Co., Ltd., China) for 6 h at 60°C. Then, the GAG content in the digested solution was calculated according to the absorbance value at 525 nm. Additionally, the shark cartilage chondroitin sulfate (Sigma, USA) was used as a standard in the DMMB assay.
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6

Quantification of GAG Synthesis by NP Cells

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To quantify the GAG content synthesized by the NP cells, a DMMB assay was performed according to a previous method25 (link). Briefly, after NP cells (seeded in a 6-well plate, 1 × 104 cells/well) were incubated with different test compounds for 1 and 3 days, NP cells were collected and suspended in PBS containing 5 mg/mL papain (Sangon, Biotech Co., Ltd., China) for 6–8 hours at 60 °C. Then, the GAG content in the digested sample was measured using the 1,9-dimethyl methylene blue (DMMB) assay, in which shark cartilage chondroitin sulfate (Sigma, USA) was used as a standard, and the absorbance at 525 nm was measured.
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7

Evaluating Antibacterial Substance Sensitivity

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To evaluate the sensitivity of antibacterial substances to catalase and protease, neutralised CFS from each strain was incubated for 2 h at 37 °C with the following: catalase (3000 U/mg, Sangon, Shanghai, China), pepsin (15,000 U/mg, Sangon, Shanghai, China), trypsin (250 U/mg, Sangon, Shanghai, China) and papain (6000 U/mg, Sangon, Shanghai, China). The enzymes were used at a final concentration of 1 mg/mL in 50 mmol sodium phosphate buffer (pH 7.00), except for pepsin (pH 2.00) [22 (link),23 (link)]. Subsequently, the enzymes were inactivated by boiling at 100 °C for 10 min, after which the pH of each CFS was re-adjusted to 6.00. The antibacterial ability was determined according to the procedure described in Section 2.1.
To evaluate the sensitivity of antibacterial substances to heat, CFS from each strain was incubated under the following conditions: 60 °C for 10 min, 60 °C for 30 min, 60 °C for 1 h, 90 °C for 10 min, 90 °C for 30 min and 121 °C for 15 min. Subsequently, the pH of each CFS was re-adjusted to 6.00. The antibacterial ability was determined according to the procedure described in Section 2.1.
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8

Quantifying Proteoglycan Content in Disc Samples

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The entire jelly-like NP was isolated from each level discs at 6 months after surgery (n = 6). The amount of proteoglycan content, mainly s-GAG, was quantified using the 1,9-dimethylmethylene blue (DMMB) method [38 (link), 39 (link)]. Briefly, each lyophilized sample was digested with 125 μg/mL papain (Sangon Inc, ShangHai; PRC) in sterile PBS, 5 mM EDTA, and 5 mM cysteine · HCl at pH 6.8 and 60 °C overnight. After complete digestion, 20 μL papain digest were added to 200 μL of DMMB solution, with absorbance detected at 520 nm. Total sGAG in the disc for each group was normalized according to the tested DNA amount, and then the sGAG/DNA ratio was measured and reported.
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9

Quantifying GAG Synthesis in NP Cells

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The DMMB assay was performed to measure GAG synthesized by NP cells [41 (link)]. Briefly, after DBM samples were suspended in 1 mL of PBS containing 5 mg/mL papain (Sangon, Biotech Co., Ltd., Shanghai, China) for 6–8 hours at 60 °C. Then, the GAG content in the digested sample was measured at an absorbance value at 525 nm via the 1,9-dimethyl methylene blue (DMMB) assay, in which shark cartilage chondroitin sulphate (Sigma-Aldrich) was used as a standard.
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10

Isolation and Culture of Brain Endothelial Cells

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The brain tissue was cut and digested in HEPES (12,360,038, Gibco™) containing 30 U/ml papain (A501612, Sangon Biotech) and 40 μg/ml DNase I for 60 min as described above. At the end of digestion, 30% bovine serum albumin (A8010, Solarbio) was added to the PBS. The resulting cell suspension was centrifuged at 250 × g for 5 min, and the cells were resuspended in endothelial cell culture medium (CC-3202, Lonza) and plated in culture dishes precoated with 0.02% collagen type I (C8061, Solarbio). After 1 day of culture in a 37 °C cell incubator at 5% CO2, the medium was changed. The endothelial cells were passaged 3 times to purify the endothelial cells, and the cells were used for subsequent cell experiments after the purity of the cells was > 99%, as determined by immunofluorescence staining with CD 31 (1:100, NB100-2284, NOVUS).
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