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34 protocols using eht1864

1

Antibodies for Alphavirus and RVFV Detection

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Mouse monoclonal antibodies against CHIKV (2D21-1), EEEV (1C2), VEEV (1A4A-1), WEEV (9F12), and RVFV envelope glycoprotein Gn (4D4) and nucleoprotein (R3-ID8-1-1) were obtained from US Army research Institute of Infectious Diseases (USAMRIID) archives [61 (link)]. Goat antibody against VEEV capsid (C) or envelope protein was generously provided by AlphaVax (via Kurt Kamrud). Rabbit antibodies against Arp3, actin, N-WASP, GAPDH, FLAG, and HA were obtained from Sigma-Aldrich. Mouse monoclonal antibodies against actin, CD44, GGA3, and Rac1 were purchased from BD Transduction Laboratories. Rabbit antibody against α/β-tubulin was obtained from Cell Signaling Technology. Sheep anti-human TGN46 antibody was from AbD Serotec. Alexa Fluor-conjugated antibodies and phalloidin, Hoechst 33342, and HCS CellMask Red were obtained from Life Technologies. All chemical inhibitors were purchased from Sigma-Aldrich, with the exception of EHT1864 (Tocris Bioscience). Cells were incubated with inhibitors for 1 h before addition of viruses unless otherwise indicated in the figure legends.
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2

Pharmacological Modulation of Actin Dynamics

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Blebbistatin (Sigma) and β-cyclodextrin (Sigma) were used at a final concentration of 20 and 250 μM respectively. ML141 (TOCRIS bioscience, Bristol, UK) was used at a final concentration of 10 μM (for low concentration experiments) and 30 μM (for high concentration experiments); EHT1864 (TOCRIS) was used at a final concentration of 10 μM. All inhibitors used were added after about 60–90 min of imaging, and the acquisition continued for at least 90 min after addition, at the conditions described in paragraph Live Cell Imaging.
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3

Stable and Transient Cell Line Generation

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Cell lines (ATCC) were grown in DMEM (Life Technologies) with 10% FBS (Hyclone). MCF-7 and T47D cells stably expressing shRNA targeting PTEN or mismatch control (shMM) were described previously [41 (link)]. Generation of other stable Cell lines is described in Supplementary Methods. In transient transfection experiments, cells were transfected with pcDNA plasmid encoding myc-PREX1-HA (from Atanasio Pandiella, CSIC-Universidad de Salamanca) or FLAG-HA control (Addgene) plus Lipofectamine 2000. Cells were transfected with siRNA targeting P-REX1 or AllStars Negative Control (Qiagen, Dharmacon) plus Lipofectamine RNAiMAX (Life Technologies). Cells were treated with IGF-1 (PeproTech), heregulin (HRG), BKM-120, GDC-0941, MK-2206 (Selleckchem), or EHT1864 (Tocris Bioscience) as indicated in figures.
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4

Isolation and Culture of Tumor-associated IMCs

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Tumour-associated IMCs were freshly isolated from Braf+/LSL−V600E;CreER+/0 mice and cultured in serum-free Dulbecco's modified Eagle medium (DMEM) (Invitrogen) as previously described (Kamata et al., 2015 (link), 2020 (link)). Atorvastatin (3.3 µM, Generon), lonafarnib (1-5 µM, Tocris Bioscience), GGTI-298 (8 µM, Tocris Bioscience), ML141 (10 µM, Merck) and/or EHT1864 (1-10 µM, Tocris Bioscience) were added to the serum-free IMC culture for 72 h. IMCs cultured for 96 h in serum-free DMEM were treated with the CCR1 inhibitor J113863 (5 µM, Tocris Bioscience) for 1-24 h as indicated. For membrane protein purification and detergent-insoluble protein analysis, primary IMCs were cultured for 48-72 h in DMEM containing 1% foetal bovine serum (Invitrogen) supplemented with Atorvastatin (3.3 µM), epoxomicin (0.05 µM, Sigma-Aldrich) and/or MG132 (3.3 µM, Sigma-Aldrich).
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5

Pharmacological Inhibitor Protocol

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Penicillin, streptomycin, Dulbecco's Modified Eagle's Medium (DMEM), SB 203580, GW 5074, PD 98059, JNK-IN-8, and manumycin A were obtained from Sigma-Aldrich (St. Louis, MO, USA). Geldanamycin, SB 202190, SP 600125, EHT 1864 were obtained from Tocris Bioscience (Northpoint, UK).
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6

Actin and Microtubule Modulation Assay

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CK-666 (200μM, 1h; Sigma, SML0006), Latrunculin A (1 μM, 0–2h; Sigma, L5163), Cytochalasin D (100nM, 1–2h; Sigma, C2618), DMSO (1h; Sigma, D2650), Nocodazole (10/25 μM; Sigma, M1404). EHT1864 (20μM, 1h; Tocris), Rhosin hydrochloride (100μM, 1h; Tocris), C3 Transferase (2μg/mL, 3h; Cytoskeleton), Y27632 (10μM, 1h; Sigma), Blebbistatin (85μM, 1h; Sigma), ML141 (25μM, 1h; Millipore Sigma), Wiskostatin (10μM, 1h; TOCRIS), SMIFH2 (25 mM, 1h; Sigma), U0126 (20 μM, 1hr; 19–147, EMD Millipore), Erlotinib (1μg/ml, 1hr; SML2156, Sigma), DMSO (1h; Sigma).
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7

Striatal Intracerebral Perfusion of Receptor Antagonists

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Losartan, lisinopril and AngII were purchased from Wako Pure Chemical (Tokyo, Japan). Benazepril was purchase from Tokyo Chemical Industry (Tokyo, Japan). PD123319, ZD7155, A779, SR202 and EHT1864 were purchased from Tocris Bioscience (Bristol, UK). Diphenylene iodium (DPI) and 4-(2-aminoethyl) benzenesulfonyl fluoride (AEBSF) were purchased from Sigma-Aldrich. A water-soluble derivative of forskolin, 7-deacetyl-7-[O-(N-methylpiperazino)-γ-butyryl]-forskolin (forskolin-ws), was purchased from Calbiochem (San Diego, CA, USA).
Antagonists of AT1R (losartan and ZD7155) and AT2R (PD123319), the Mas receptor (A779) and PPARγ (SR202) and inhibitors of ACE (benazepril and lisinopril), NOX (DPI and AEBSF) and Rac (EHT1864) were dissolved in the perfused solution and administered to the striatum through the probe during the experimental period. Forskolin-ws, which stimulates cAMP production by activating adenylyl cyclase48 (link), and AngII were dissolved in sterilized physiological saline (Otsuka Pharmaceutical, Tokyo, Japan) and directly administered into the striatum through the thin needle of the MI-A-I-8-03 probe using an ESP-32 pump. The flow rate was 0.1 μL/min, and the total volume was 1 μL for forskolin-ws and 2 μL for AngII.
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8

Prolactin-Induced Differentiation Assay

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For differentiation assays, EpH4 cells were cultured in DMEM-F12 supplemented with 5 µg/ml insulin, 1  μg/ml hydrocortisone and antibiotics overnight with 2% Matrigel (LrBM, BD Biosciences) added to the culture medium (LrBM overlay) as required. Cells were stimulated with 3 µg/ml sterile-filtered sheep pituitary Prl (Sigma #L6520; 150 nM final Prl concentration) for 15 minutes. EpH4 cells were treated with inhibitors (Pitstop-2 [15 µM, Abcam]; Dyngo-4a [60 µM, Abcam]; Filipin III [8 µM, Sigma-Aldrich]; AZD-1480 [10 µM, Santa Cruz Biotechnology]; EHT 1864 [25–100 µM, Tocris]) or an equal volume of DMSO (where appropriate) diluted in differentiation medium for 15 minutes at 37 °C before addition of Prl.
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9

Axl and Gas6 Signaling Pathway Characterization

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Abs against P-Axl(Y702) (rabbit), P-AKT(S473) (rabbit), anti-Mer (mouse), P-src (Y416), and anti-P-Tyrosine (P-Tyr-100) (mouse) were obtained from Cell Signaling Technology (New England BioLabs, Beverly, MA, USA); anti-Axl (goat), anti-FAK (rabbit), anti-Tyro-3 (goat), and anti-β1 and anti-p130Cas (mouse) from Santa Cruz Biotechnology (Santa Cruz, CA, USA); anti-α-tubulin (mouse) from Thermo Scientific (Fremont, CA, USA); anti-β-actin (rabbit) from Sigma-Aldrich (Saint Louis, MO, USA); anti-β3 from Abcam (Cambridge, UK); and anti-β4 from Millipore (Merck Millipore, Oxford, UK).
Alexa Fluor 488 phalloidin was obtained from Molecular Probes (Invitrogen, Carlsbad, CA, USA). Human recombinant Gas6 and Axl-Fc were from R&D systems, Inc. (Minneapolis, MN, USA), as was the ELISA for Gas6 dosage. FN was from Sigma-Aldrich. The Taqman Gene Expression Assays were from Applied Biosystems (Foster City, CA USA). Puromicine and Lipofectamine 2000 were from Invitrogen. R428, the Axl inhibitor, was from Rigel (South San Francisco, CA, USA); EHT1864, the Rac inhibitor, was from Tocris (Minneapolis, MN, USA).
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10

Actin and Microtubule Modulation Assay

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CK-666 (200μM, 1h; Sigma, SML0006), Latrunculin A (1 μM, 0–2h; Sigma, L5163), Cytochalasin D (100nM, 1–2h; Sigma, C2618), DMSO (1h; Sigma, D2650), Nocodazole (10/25 μM; Sigma, M1404). EHT1864 (20μM, 1h; Tocris), Rhosin hydrochloride (100μM, 1h; Tocris), C3 Transferase (2μg/mL, 3h; Cytoskeleton), Y27632 (10μM, 1h; Sigma), Blebbistatin (85μM, 1h; Sigma), ML141 (25μM, 1h; Millipore Sigma), Wiskostatin (10μM, 1h; TOCRIS), SMIFH2 (25 mM, 1h; Sigma), U0126 (20 μM, 1hr; 19–147, EMD Millipore), Erlotinib (1μg/ml, 1hr; SML2156, Sigma), DMSO (1h; Sigma).
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