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11 protocols using vegfr 2 pe

1

Flow Cytometry Analysis of CD34+ Cells

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Human nonexpanded and expanded PB-CD34+ cells (n = 5) were analyzed by flow cytometry (FACSCalibur flow cytometer, (Becton-Dickinson (BD), San Jose, CA). Dead cells were excluded by propidium iodide (PI) staining (Sigma, St Louis, MO). The CD34+ cells were incubated with a FcR blocking reagent (Miltenyi Biotec, Auburn, CA) and incubated with the monoclonal antibodies for 30 minutes at 4 °C. The stained cells were washed, resuspended, and then analyzed using Quad Statistics of CellQuest software (BD). The following monoclonal antihuman antibodies were used to characterized the CD34+ cell population: CD34-FITC (BD), CD31-PE (BD), CD133-PE (Miltenyi Biotec, Auburn, CA), CD68-PE (BD), CD83-PE (BD), VE-cadherin-PE (BD), VEGFR-2-PE (R&D Systems, Minneapolis, MN), Tie-2 (BD), CD117-PE (BD), CD45-PE (BD), IgG2a-FITC isotope controls (Miltenyi Biotec), and IgG1-PE isotope controls (Miltenyi Biotec).27 (link)The DNA content analysis was assessed by staining ethanol-fixed cells with PI and monitoring with the FACSCalibur flow cytometer. At least 20,000 cells were collected and analyzed with CellQuest software. Cell cycle distributions were calculated with ModFit LT cell-cycle analysis software (Verity Software House, Topsham, ME).
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2

Characterizing Endothelial CD109 Expression

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To validate by flow-cytometry the expression of CD109 on endothelial cells, in vitro endothelial colonies were obtained from peripheral blood (PB) of 10 healthy donors (7 female, 3 male) and 23 cancer patients as previously described [32] (link).
Briefly, mononuclear cells (MNCs) were isolated from PB using Ficoll-Paque gradient centrifugation, resuspended into EGM2 medium (Lonza, Walkersville, MD) and seeded onto Collagen I petri dishes (35 mm, Biocoat, BD Labware, Bedford, MA). Cultures were incubated at 37°C, 5% CO2, 95% relative humidity for 3–4 weeks. Medium was changed every 2 days for 7 days and then twice a week until first passage, and culture monitored for the detection of endothelial colonies on the basis of morphological features, as previously described [32] (link). After 15–20 days, cells were detached with trypsin/EDTA (Gibco, BRL, UK) and stained with monoclonal antibodies (MoAbs) anti- CD31-PeCy7, CD34-APC, CD45-H7, and 7-AAD (all from Beckman Coulter) CD146-Pe (Chemicon), VEGFR-2- PE (R&D) and CD109-Pe (Abcam) for flow cytometry studies.
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3

Multicolor Flow Cytometry Analysis

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Following blockade of Fc receptors (FcR blocking reagent, Myltenyi Biotec), cells were labeled with fluorophore conjugated antibodies to the following proteins: human CD31-FITC (BD, mouse), CD34-PerCP (BD, mouse), CD45-Pacific Orange (Invitrogen, mouse), CD11b-PE-Cy7 (BD, mouse), human neuropilin-1-PE (Miltenyi Biotec, mouse), CD133-APC (Miltenyi Biotec, mouse), human VEGFR-1 (Abcam, rabbit), VEGFR-2-PE (R&D, goat), VEGFR-3 (ABBIOTEC, rabbit), CD11c-Pacific Blue (Biolegend, mouse), CD14-PerCP-Cy5.5 (Biolegend, mouse), and CD14-APC (BD, mouse). Unlabeled antibodies used included anti-podoplanin (ABBIOTEC, rabbit followed by a Cy5 goat anti-rabbit or Dylight-488 donkey anti-rabbit, both from Jackson Immunoresearch),and mouse VE-Cadherin (R&D, goat followed by an Alexa-647 donkey anti-goat from Invitrogen). Labeled cells were analyzed using a LSRII flow cytometer (BD Biosciences) equipped with a 610/20 nm filter on the violet detector.
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4

Circulating EPC and CEC Quantification

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To measure circulating EPCs and CECs, a method from Duda et al.18 (link) was adapted with modifications as in our previous study19 (link). Flow cytometry was used for whole blood analysis without enrichment procedures to avoid manipulation artifacts. The EPCs were characterized as CD31+ VEGFR-2+ CD45dim CD133+; mature CECs were defined as CD31Bright VEGFR-2+ CD45- CD133-. The chromophores conjugated with specific antibodies used in this study included CD31-FITC (BD Pharmingen, San Diego, CA), CD133-PE (Miltenyi Biotec, Auburn, CA), CD45-PerCP (BD Pharmingen), and VEGFR2-PE (R&D Systems, Minneapolis, MN). For apoptotic CECs, AAD-7 was also applied to stain the apoptotic CECs. During the analysis of flow cytometry data, the mononuclear cell population was gated to avoid RBC, platelet, cell debris, and neutrophil contamination; 100,000 events in the gated population were collected by a FACScaliber flow cytometer (BD Biosciences, San Jose, CA, USA). The acquisition data were collected and analyzed using CellQuest Software (BD Biosciences).
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5

Immunophenotyping of PBMNCs

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Peripheral blood samples were collected into heparinized tubes; PBMNCs were then
isolated using Lymphoprep™ tubes (AXIS-SHIELD PoC AS, Oslo, Norway).12 (link) Red cell lysis was performed using BD PharmLyse™ (BD Pharmingen, San
Diego, CA, USA). IgG was blocked for 10 min at room temperature; subsequently,
immunophenotyping of PBMNCs was performed by staining for 15 min on ice in the
dark with fluorochrome-labeled monoclonal antibodies, including anti-human
CD133-FITC (Miltenyi Biotech, Miltenyi Biotec, Bergisch Gladbach, Germany),
VEGFR2-PE (R&D Systems, Minneapolis, MN, USA), CD34-PerCP (BD Pharmingen),
CD90-FITC (BD Pharmingen), PDGFRα-PE (BD Pharmingen), and NGFR-APC (Miltenyi Biotech).13 (link) Isotype-matched control antibodies were used as negative controls to
adjust for fluorochrome overlap.
The fluorescence intensity of cells labeled with fluorochromes was examined using
an Accuri C6 flow cytometer (BD Pharmingen). The data were analyzed using FlowJo
software v10 (BD Pharmingen).
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6

Identifying Human Endothelial Progenitor Cells

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In order to identify human EPCs, 2 × 105 cells were suspended in 50 μL fluorescence-activated cell sorting (FACS) buffer (PBS containing 0.5% FBS) then stained with 0.2 mg/mL of each of the following anti-human antibodies: CD31-PE (LifeSpanBioSciences, Seattle, WA, USA), CD34-BV421 (BD Biosciences, San Jose, CA, USA), CD45-BB515 (BD Biosciences), VEGFR-2 PE (R&D Systems, Minneapolis, MN, USA), CD14-FITC (BD Biosciences), and CXCR4-PE (BioLegend, San Diego, CA, USA). OneComp eBeads (Carlsbad, CA, USA) were first stained with 1 μL of each different fluorochrome then used as single-color compensation controls. An unstained sample served as a reference for positive staining. Cells were analyzed using a Cyan flow cytometry (Beckman Coulter, Brea, CA, USA). Single cell data was analyzed using FlowJo, LLC software that gave a percentage for positive cells.
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7

Flow Cytometric Characterization of Stem Cells

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Whole blood (100 µL) was incubated with 5 µL of V500 CD45 (BD Bioscience, San Jose, CA, USA), 20 µL of PerCP-Cy5.5 CD34 (BD Bioscience, San Jose, CA, USA), 5 µL of PE VEGFR-2 (R & D Systems, Minneapolis, MN, USA ), 5 µL APC CD133 (Miltenyi Biotic Inc., Bergisch Gladbach, Germany) and 10 µL of FITC CD144 (BD Bioscience, San Jose, CA, USA) for 30 min. Subsequently, 2 mL of PharmLyse (BD Bioscience, San Jose, CA, USA) were used to lyse the red cells. The sample was then analyzed by flow cytometry on a BD FACS Canto™ II system and the results data processed using BD FACSDiva™ software as described previously [14 (link)].
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8

Enumeration of circulating endothelial cells and progenitors

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100 µl of whole blood [6 (link)] was incubated with 5 µl of V500 CD45 (B.D Bioscience), 20 µl of PerCP-Cy5.5 CD34 (BD Bioscience), 5 µl of PE VEGFR-2+ (R&D), 5 µl APC CD133 (Miltenyi Biotec USA), 10 µl of FITC CD144 for 30 min. Subsequently, 2 mls of pharmlyse (BD Bioscience) was used to lyse the red cells. The sample was then analysed by flow cytometry on BD FACS Canto™ II system and results by using BD FACSDiva™ software. On average 450,000 events were counted. cEPCs were defined as CD45dimCD34+VEGFR-2+ cells and cECs as CD45dim, CD133, CD34+, and CD144+ events. cEPC count was expressed as % leukocytes (Intra-assay variation <8 %) and cECs as per ml of blood.
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9

Enumeration of Circulating Endothelial Cells and Progenitors

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100 μl of whole blood was incubated with 5 μl of V500 CD45 (BD Biosciences, Oxford, UK), 20 μl of PerCP-Cy5.5 CD34 (BD Biosciences, Oxford, UK), 5 μl of PE VEGFR-2+ (R&D Systems, Roche Diagnostics, West Sussex, UK), 5 μl APC CD133 (BD Biosciences, Oxford, UK), 10 μl FITC CD144 (BD Biosciences, Oxford, UK) for 30 min. Subsequently, 2 ml of pharmlyse (BD Biosciences, Oxford, UK) was used to lyse the red cells. The sample was then analysed by flow cytometry on BD FACS Canto™ II system and samples were run to approximately 500,000 total events. Analysis was carried out using BD FACSDiva™ software. On average 440,000 events were counted. CEPCs events were defined using the most recent definition of CD45dimCD34+ VEGFR2 (KDR)+, as recommended by Van Craenenbroeck et al. [21 (link)]. Intra-assay variation (CD45dimCD34+VEGFR-2+) was less than 8 %. The results were expressed as % leukocytes [22 (link), 21 (link)]. CECs events were defined as CD45dimCD133-CD34+CD144+ [23 (link), 24 (link)].
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10

Flow Cytometry-based cEPC Quantification

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The number of cEPCs was assessed by flow cytometry by determining the number of CD34/CD133/VEGFR2-positive cells. In particular, 100 µl of each sample prepared as described in the previous section, were stained with 1 µl each of FITC-CD34 (BD Biosciences, Franklin Lakes, NJ, USA), APC-CD133/2 (Miltenyi Biotec, Bergisch Gladbach, Germany), and PE-VEGFR-2 (R&D Systems, Minneapolis, MN, USA), and incubated in the dark in ice for 15 min. For each sample, a control tube with no antibodies was prepared together with the stained tube. After washing the cells with PBS, FACS analysis was performed on a FacsCanto (BD Biosciences, Franklin Lakes, NJ, USA). The acquisition goal was 2 × 105 events. Samples were analyzed gating a population with morphological characteristics between lymphocytes and monocytes, evaluated on the basis of side scatter and forward scatter parameters. As evident from Figure 1, where representative dot-plots relative to a control and a T1DM patient (belonging to the “<20 y T1DM cohort”) are shown, the cEPC count is reported in Q2, that is a part of the P4 quadrant. Throughout the manuscript, “cEPC counts” refers to the absolute cEPC number per 2 × 105 PBMC.
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