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8 protocols using goat anti mouse 170 6516

1

Immunoblotting and Immunofluorescence Protocols for MCL-1, BCL-2, and BCL-XL

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The following primary and secondary antibodies were used for immunoblotting: mouse monoclonal anti-MCL-1 (clone 10, sc-12756) purchased from Santa Cruz Biotechnology, Inc., Dallas, TX, USA; rabbit monoclonal anti-BCL-2 (clone 50E3, #2870), rabbit monoclonal anti-BCL-XL (clone 54H6, #2764) purchased from Cell Signaling Technology, Inc., Danvers MA, USA; and mouse monoclonal anti-GAPDH (GTX3066) purchased from GeneTex, Inc., Irvine, CA, USA; goat anti-mouse (170-6516) or anti-rabbit IgG (H + L)-HRP conjugate (170-6515) purchased from BioRad, Hercules, CA, USA. For indirect immunofluorescence, mouse monoclonal anti-MCL-1 (clone 10, sc-12756) purchased from Santa Cruz Biotechnology, Inc., Dallas, TX, USA and Alexa Fluor 568 goat anti-mouse (A-11031) secondary antibody obtained from Invitrogen/Thermo Fisher Scientific, Waltham, MA, USA, were used.
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2

Protein Immunoblotting Assay

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Twenty-five to fifty micrograms of protein lysates were analyzed by SDS polyacrylamide gel electrophoresis (PAGE). After transfer to a 0.45-µm nitrocellulose membrane (GE Healthcare, Amersham, Thermo Fisher Scientific) and blocking in 10 mM Tris–HCl (pH 8.0), 150 mM NaCl, and 0.05% (v/v) Tween 20 (TBST) containing 2.5% (w/v) skim milk, specific proteins were identified using primary antibodies for 16 to 18 h at 4 ℃. A secondary antibody [donkey anti-goat (sc-2020; Santa Cruz), goat anti-rabbit (1706515; Bio-Rad), or goat anti-mouse (1706516; Bio-Rad)] conjugated to horseradish peroxidase, and a luminol enhancer detection system (32106, Pierce, Thermo Fisher Scientific) were used to visualize the proteins.
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3

Characterization of zDHHC15 Protein Expression

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Primary antibodies used were: anti-zDHHC15 (Abcam, Cambridge, MA, #ab121203, 1:250, western blot), anti-zDHHC15 (Thermo Scientific, Waltham, MA, #PA39327, immunofluorescence, 1:100), anti-Flag (Sigma Aldrich, St Louis, MO, #F3165, 1:1000), anti-Myc (Origene, Rockville, MD, #TA150121, 1:1000), anti-β-actin (Novus Biologicals, Centennial, CO, #NB600-503, 1:1000), anti-PSD-95 (Abcam, Cambridge, MA, #ab2723, 1:500), anti-gephyrin (Synaptic Systems, Göttingen, Germany #147011, 1:500), anti-GAD65 (Synaptic Systems, Göttingen, Germany #198104, 1:500), anti-GFAP (Synaptic Systems, Göttingen, Germany #173004, 1:400), anti-MAP2 (Millipore, Burlington, MA, MB3418, 1:2000), anti-giantin (Synaptic Systems, Göttingen, Germany, #263004, 1:500), anti-GM130 (BD Biosciences, Franklin Lakes, NJ, #610822, 1:200). Secondary antibodies from Life Technologies (Carlsbad, CA,) used: (1:500), anti-mouse AF568 IgG2a (#A21134), anti-mouse AF647 IgG1 (#21240), anti-rabbit AF488 (#A11008), anti-rabbit AF568 (#A11011), anti-guinea pig AF633 (#A21105). HRP conjugated secondary antibodies were obtained from Bio-Rad (Hercules, CA): goat anti-mouse #170-6516 and goat anti-rabbit (#170-6515, 1:300). DAPI was used for nuclear staining (Life Technologies, Carlsbad, CA, #D1306, 1:1000).
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4

Immunoblotting Antibody Detection Protocol

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For immunoblotting, the following primary and secondary antibodies were used: rabbit polyclonal p70 S6 kinase (#9202), rabbit monoclonal phospho-p70 S6 kinase (Thr389) (#9234), rabbit monoclonal AKT kinase (#4691), rabbit monoclonal phospho-AKT kinase (Ser473) (#9234) obtained from Cell Signaling Technology, Inc., Danvers MA, USA; p21waf1 (sc-56335) obtained from Santa Cruz Biotechnology, Inc., Dallas, TX, USA and mouse monoclonal anti-GAPDH (GTX3066) purchased from GeneTex, Inc., Irvine, CA, USA; goat anti-mouse (170-6516) or anti-rabbit IgG (H + L)-HRP conjugate (170-6515) purchased from BioRad, Hercules, CA, USA.
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5

Immunoblotting Antibodies and Reagents

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Anti-ABCG2 (D5V2K XP®, #42078) and anti-p53 (1C12, #2524) monoclonal antibodies were purchased from Cell Signaling Technology (Danvers, MA, U.S.A.). Anti-β-actin (C4, sc-47778) and anti-β-tubulin (D-10, sc-5274) monoclonal antibodies were purchased from Santa Cruz Biotechnology (Dallas, TX, U.S.A.). Anti-xanthine oxidase monoclonal antibody (EPR4605, ab109235) was purchased from Abcam (Cambridge, MA, U.S.A.) and anti-GLUT9 polyclonal antibody (PA5-22966) was purchased from Thermo Fisher Scientific (Waltham, MA, U.S.A.). Horseradish peroxidase-conjugated goat anti-rabbit (#1706515) and goat anti-mouse (#1706516) were purchased from Bio-Rad Laboratories (Hercules, CA, U.S.A.).
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6

Western Blot Analysis of REV-ERBα and REV-ERBβ

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Muscle lysates were prepared in RIPA buffer (Sigma) supplemented with Halt protease and phosphatase inhibitor cocktail (#78446, Thermo Scientific), protein concentration determined using the bicinchoninic acid assay (Pierce, Rockford, IL, USA), and SDS-PAGE performed using NuPAGE 4%–12% gels (Invitrogen). Proteins were transferred onto a PVDF membrane and incubated with rabbit anti-REV-ERBα (kind gift from Ron Evans), mouse anti-REV-ERBβ (D-8; sc-398252, Santa Cruz), or mouse anti-GAPDH (ab8245, Abcam). Membranes were then incubated with HRP-conjugated donkey anti-rabbit (sc-2317, Santa Cruz) or goat anti-mouse (170–6516, Biorad) secondary antibodies. HRP activity was measured by chemiluminescence (Immobilon Western, Millipore), and bands visualized on CP-BU Medical X-Ray Film (Agfa HealthCare NV, Gevaert, Belgium).
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7

Measuring 14-3-3 Degradation in Cells

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Lysates of SHSY5Y cells or zebrafish brain tissue (5 mg protein) were separated in 10% TGX gels (Bio-Rad) and transferred onto PVDF membrane (Bio-Rad) using the Transblot system (Bio-Rad). Western blotting membranes were incubated with rabbit anti-pan-14-3-3 (sc-629, RRID: AB_2273154; 1:1000; Santa Cruz Biotechnology) as primary antibody. Mouse anti-b-actin (A1978, RRID: AB_476692; 1:1000; Sigma-Aldrich) or rabbit anti-GAPDH (ab9485, RRID: AB_307275;1:1000; Abcam) was used as loading control, and goat anti-rabbit (170-6515, RRID: AB_11125142; 1:1000; Bio-Rad) and goat anti-mouse (170-6516, RRID: AB_11125547; 1:1000; Bio-Rad) were used as secondary antibodies. Ebselen-treated samples were referenced to untreated, which were given the arbitrary value of 1.
For experiments on 14-3-3 degradation in cells, 500,000 SH-SY5Y cells per well were seeded in six-well plates; 5 hours postseeding, cells were treated with 5-10 mM ebselen or ebselen oxide and 50 mM Z-VAD-FMK (caspase inhibitor; Adooq Biosciences) and DMSO (0.05%) as a control (without ebselen and caspase inhibitor). Cells were incubated for 16 hours before treating with 500 nM bortezomib (proteasome inhibitor; Fisher Scientific) for 2 hours before collecting for Western blot analysis. Densitometric analysis was performed using Image Laboratory Software 6.0.1 (Bio-Rad).
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8

Western Blot Protein Analysis

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Twenty-five to fifty micrograms of protein lysates were analysed by SDS polyacrylamide gel electrophoresis (PAGE). After transfer to a 0.45 l nitrocellulose membrane (GE Healthcare, Amersham, Thermo Fisher Scientific), visualization of blotted protein with ponceau S (Applichem A2935) and blocking in 10 mM Tris-HCl pH 8.0, 150 mM NaCl and 0.05% (v/v) Tween 20 (TBST) containing 2.5% (w/v) skim milk, specific proteins were identified using primary antibodies for 16-18 h at 4 °C. A secondary antibody [donkey anti-goat (sc-2020; Santa Cruz), goat anti-rabbit (1706515; Bio-Rad, Feldkirchen, Germany) or goat antimouse (1706516; Bio-Rad)] conjugated to horseradish peroxidase, and the luminol enhancer detection system (32106, Pierce, Thermo fisher Scientific) was used to visualize the proteins.
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