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6 protocols using ab70359

1

Protein Isolation and Western Blotting

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Cells were homogenized in RIPA buffer supplemented with protease and phosphatase inhibitors and centrifuged at 15,000 g for 15 min at 4 °C. Protein concentration was determined using the BCA protein assay kit (Thermo Scientific, Rockford, IL, USA), and equal amounts of protein (20–30 μg) were subjected to 8–12% SDS-PAGE and transferred to an Immobilon membrane (Millipore, Bedford, CA, USA). Blots were treated with primary antibodies, followed by the corresponding secondary antibody with horseradish peroxidase activity. Blots were developed using Pierce ECL reagent (Thermo Fisher Scientific, Waltham, MA, USA) in a Fujifilm LAS 3000 Intelligent Dark Box IV imaging system (Tokyo, Japan).
The following primary antibodies were used: anti-PEPCK-M (ab70359, Abcam, Cambridge, UK), anti-PEPCK-C (generous gift of Dr. Daryl K. Granner, Vanderbilt University, Nashville, TN, USA), anti-SOD2 (ab13534, Abcam), anti-p53 (ab26, Abcam), anti-p21 (sc397, Santa Cruz Biotechnology, Dallas, TX, USA), anti-gamma tubulin (T6557, Sigma-Aldrich, St. Louis, MO, USA), and anti-PKC-ζ (9372S, Cell Signaling Technology, Danver, MA, USA).
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2

Metabolic Regulation Pathway Investigation

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3-mercaptopicolinic acid, Z-VAD-FMK and Necrostatin-1 were purchased from Santa Cruz Biotechnology. Dimethyl-2-oxoglutarate, dimethyl-fumarate, dimethyl-succinate and dimethyl-malate were purchased from Tokyo Chemical Industry, Sodium pyruvate and L-glutamine were purchased from Thermo Fisher Scientific, N-acetylcysteine (NAC) was purchased from Sigma-Aldrich, and dichlorofluorescin diacetate from Beyotime.
Antibodies against PCK1 (ab28455, Abcam), PCK2 (ab70359, Abcam) and YAP1 (ab52771, Abcam), phospho-AMPKα (Thr172) (Cell Signaling Technology, 2535), AMPKα (Cell Signaling, 2532), phospho-ACC (Ser79) (Cell Signaling, 11818) and phospho-c-Jun (Ser73) (Cell Signaling, 3270) were purchased commercially.
pBABE-Flag-PCK1 and pQCXIH-Flag-PCK2 were cloned from cDNA provided by Dr. Jiahuai Han (Xiamen University, Xiamen, China). The PB[CMV-myc-YAP-5SA]DS, PB[Act-RFP]DS and Act-PB Transposase plasmids were generous gifts from Dr. Bin Zhao (Zhejiang University, Hangzhou, China). The PB[CMV-flag-PCK1]DS donor plasmids were constructed by excising Act-RFP from the PB[Act-RFP]DS plasmid and ligating the corresponding fragments excised from pQCXIH vectors.
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3

Protein Extraction and Western Blot Analysis

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Cells were homogenized in radioimmunoprecipitation assay buffer supplemented with protease and phosphatase inhibitors and centrifuged at 15,000 g for 15 min at 4°C. The protein concentration was determined according to the manufacturer’s instructions of the Pierce BCA Protein Assay kit (Rockford, IL, United States). Western blots were performed with 20–50 μg of protein. Proteins were separated in 8–10% SDS-PAGE and transferred to a nitrocellulose membrane. Western blot analysis for TLR2 (SC10739, Santa Cruz, United Kingdom, diluted 1:500), TLR4 (SC30002, Santa Cruz, United Kingdom, diluted 1:1,000), NFκB (ab16502, Abcam, United Kingdom, diluted 1:1,000), p-p65 (ab86299, Abcam, United Kingdom, diluted 1:1,000), PCK2 (ab70359, Abcam, United Kingdom, diluted 1:1,000), β-actin (AP0060, Bioworld Technology, United States, diluted 1:10,000), AKT (BS1007, Bioworld Technology, United States, diluted 1:1,000), mitochondrial transcription factor A (TFAM) (BS7319, Bioworld Technology, United States, diluted 1:1,000), COX Ⅳ (AP0707, Bioworld Technology, United States, diluted 1:1,000) were carried out according to the recommended protocols provided by the manufacturers. Images were captured by Versa Doc 4000MP system (Bio-Rad, United States) and the band density was analyzed with Quantity One software (Bio-Rad, United States).
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4

Immunohistochemical Detection of PEPCK-M in Organ Carcinoma

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Tissue microarray panel (BCN962, Biomax, Rockville, MD, USA) containing multiple organ carcinoma and adjacent normal tissue was deparaffinized and rehydrated according to standard procedures. Antigen retrieval was performed by heating the slide in 10 mM sodium citrate buffer (pH 6) in a pressure cooker. The highest pressure was maintained for 3 min, and samples were let to cool down for 20 min. Endogenous peroxidase activity was inactivated by incubating samples in 6% H2O2 for 15 min.
Samples were blocked with 20% goat serum in PBS and then incubated ON with primary antibody against PEPCK-M (ab70359, Abcam) and peroxidase-based secondary anti-goat antibody. Antigen-antibody complexes were detected with a DAB peroxidase substrate kit (Dako Agilent, Santa Clara, CA, USA) according to the manufacturer’s protocol. Samples were counterstained with hematoxylin, dehydrated, and mounted with DPX. Fluorescent preparations were visualized, and images were captured with Nikon Eclipse 800 light microscope (Nikon, Tokyo, Japan).
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5

Immunohistochemical Analysis of PEPCK-M in Carcinoma

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Panel (BCN962, Biomax, Rockville, MD, USA) containing multiple organ carcinoma and adjacent normal tissue was deparaffinized and rehydrated according to standard procedures. Antigen retrieval was performed by heating the slide in 10 mM sodium citrate buffer (pH 6) in a pressure cooker. The highest pressure was maintained for 3 min, and samples were let to cool down for 20 min. Endogenous peroxidase activity was inactivated by incubating samples in 6% H2O2 for 15 min. Samples were blocked with 20% goat serum in PBS and then incubated O/N with primary antibody against PEPCK-M (ab70359, Abcam) and peroxidase-based secondary anti-goat antibody. Antigen-antibody complexes were detected with a DAB peroxidase substrate kit (Dako Agilent, Santa Clara, CA, USA) according to the manufacturer’s protocol. Samples were counterstained with hematoxylin, dehydrated, and mounted with DPX. Preparations were visualized, and images were captured with Nikon Eclipse 800 light microscope (Nikon, Tokyo, Japan).
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6

Metabolic Regulation Pathway Investigation

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3-mercaptopicolinic acid, Z-VAD-FMK and Necrostatin-1 were purchased from Santa Cruz Biotechnology. Dimethyl-2-oxoglutarate, dimethyl-fumarate, dimethyl-succinate and dimethyl-malate were purchased from Tokyo Chemical Industry, Sodium pyruvate and L-glutamine were purchased from Thermo Fisher Scientific, N-acetylcysteine (NAC) was purchased from Sigma-Aldrich, and dichlorofluorescin diacetate from Beyotime.
Antibodies against PCK1 (ab28455, Abcam), PCK2 (ab70359, Abcam) and YAP1 (ab52771, Abcam), phospho-AMPKα (Thr172) (Cell Signaling Technology, 2535), AMPKα (Cell Signaling, 2532), phospho-ACC (Ser79) (Cell Signaling, 11818) and phospho-c-Jun (Ser73) (Cell Signaling, 3270) were purchased commercially.
pBABE-Flag-PCK1 and pQCXIH-Flag-PCK2 were cloned from cDNA provided by Dr. Jiahuai Han (Xiamen University, Xiamen, China). The PB[CMV-myc-YAP-5SA]DS, PB[Act-RFP]DS and Act-PB Transposase plasmids were generous gifts from Dr. Bin Zhao (Zhejiang University, Hangzhou, China). The PB[CMV-flag-PCK1]DS donor plasmids were constructed by excising Act-RFP from the PB[Act-RFP]DS plasmid and ligating the corresponding fragments excised from pQCXIH vectors.
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