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6 protocols using p eif2α

1

Chondrocyte Apoptosis and Autophagy Regulation

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Eicosapentaenoic Acid (purity, ≥97%), 3-Methyladenine (3-MA, a PI3K inhibitor) and Dorsomorphin (Compound C, an AMPK inhibitor) were purchased from MedChemExpress (NJ, United States). Type II collagenase, TBHP, and dimethylsulfoxide (DMSO) were purchased from Sigma-Aldrich (St Louis, MO, United States). Primary antibodies for cleaved-caspase 3 (C-C3), Beclin-1, LC3B, p-mTORC1, mTORC1, BCL-2, AMPK and p-AMPK were procured from Cell Signaling Technologies (Danvers, MA, United States). Antibodies against BAX, BCL-2, Collagen II, MMP13 and P62 were purchased from Abcam (Cambridge, United Kindom). Antibodies against p-PERK, PERK, p-eIF2α, eIF2α, CHOP, ADAMTS5, Aggrecan, and ATG5 were purchased from ABclonal (WH, CHINA). Antibodies against ATF4, GRP78, Collagen II, and β-actin were purchased from Proteintech (NJ, China). Horseradish peroxidase-labeled secondary antibodies, Alexa Fluor® 488-labeled goat anti-rabbit IgG (H + L) secondary antibody, and Alexa Fluor® 594-labeled goat anti-mouse IgG (H + L) secondary antibody were purchased from Abcam. Further, 4′,6-diamidino-2-phenylindole (DAPI) was purchased from Beyotime (SH, CHINA). The reagents for cell culture were obtained from Gibco (Grand Island, NY, United States).
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2

Western Blot Analysis of Chondrocyte Signaling

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Cells were lysed with RIPA lysis buffer (Beyotime, Shanghai, China) and phosphate protease inhibitor. Protein samples were harvested, boiled, separated with 12% sodium dodecyl sulphate-polyacrylamide gel electrophoresis, and transferred to polyvinylidene fluoride (PVDF) membranes. The PVDF membranes were blocked with 5% milk and incubated overnight at 4°C with primary antibodies against GAPDH (1 : 2000, ZSGBBIO, Beijing, China), USP7 (1 : 1000, HUABIO, Hangzhou, China), collagen type II alpha 1 chain (Col2a1, 1 : 1000, HUABIO, Hangzhou, China), sex-determining region Y-box 9 (Sox9, 1 : 2000, Abcam, Cambridge, UK), Cleaved Caspase-3 (1 : 1000, CST, MA, USA), Bcl-2 (1 : 1000, ABclonal, Wuhan, China), Bcl-2-associated X (Bax, 1 : 1000, ABclonal, Wuhan, China), eIF2α (1 : 1000, ABclonal, Wuhan, China), eIF2α phosphorylation (p-eIF2α, 1 : 1000, ABclonal, Wuhan, China), activating transcription factor 4 (ATF4, 1 : 1000, HUABIO, Hangzhou, China), CHOP (1 : 300, Santa Cruz, CA, USA), p65 (1 : 1000, CST, MA, USA), p65 phosphorylation (p-p65, 1 : 1000, CST, MA, USA), and proliferating cell nuclear antigen (PCNA, 1 : 1000, HUABIO, Hangzhou, China). Then, they were incubated in horseradish peroxidase-conjugated secondary antibodies (1 : 10000, Biosharp, Hefei, China) and visualized with an electrochemiluminescence reagent.
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3

Comprehensive Protein Extraction and Analysis

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For protein extraction, cells were lysed with RIPA buffer (Biosharp, Hefei, China) containing protease inhibitors (MCE). Proteins were quantified with a BCA assay kit (Vazyme) and western blotting was done using standard procedures, as previously reported [41 (link)]. Polyvinylidene fluoride (PVDF) membranes (Millipore, Darmstadt, Germany) were utilized to transfer proteins. We detected signals and acquired images using Electrochemiluminescence (ECL) luminescent solution (Biosharp) and ChemiDoc XRS+ imaging system (BioRad). Antibodies against PCNA (Servicebio, GB11010), E-cadherin (Abclonal, A20798; Wuhan; China), N-cadherin (Abclonal, A19083), BiP (Cell Signaling Technology, 3177 S; Danvers; MA; USA), eIF2α (Cell Signaling Technology, 2103 S), p-eIF2α (Abclonal, AP0692), CHOP (Proteintech, 15204-1-AP; Wuhan; China), GDF15 (Abclonal, A0185), PPIB (Abcam, ab178397; Cambridge; MA; USA), Bax (Abclonal, A0207), Bcl-2 (Abclonal, A0208), β-actin (Cell Signaling Technology, 8457 S) were used in our study. Original Western blots are also shown as supplementary information.
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4

Western Blot Analysis of Skeletal Muscle and Treated Cells

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Western blotting was performed as previously described [34 (link)]. In brief, skeletal muscle and treated cells were lysed in ice-cold RIPA buffer with PMSF protease inhibitor (Beyotime). The supernatant was obtained by centrifugation, and the concentration of protein was determined by a BCA assay kit (Beyotime). Equal amounts of proteins from different groups were loaded and separated on 6–15% SDS–PAGE gels, transferred onto nitrocellulose membranes (Pall Corporation) and blocked for 2 h at 37 °C with 5% milk-TBST. Membranes were incubated either overnight at 4 °C with primary antibodies against: SelK (Abcam, 1: 500), MyoD (Abclonal, 1:1000), MyoG (Abclonal, 1:1000), MyHC (Abclonal, 1:1000), GRP78 (Abclonal, 1:1000), ATF6 (Abclonal, 1:1000), phospho-IRE1 (p-IRE1, Abclonal, 1:500), phospho-PERK (p-PERK, Abclonal, 1:500), phospho-eIF-2α (p-eIF-2α, Abclonal, 1:1000), CHOP (Abclonal, 1:1000), LC3B (Abclonal, 1:1000), p62 (Abclonal, 1:1000), cleaved Caspase3 (cle-Cas3, Abclonal, 1:1000), Bcl2, Bax (My lab, 1:400) and GAPDH (Servicebio, 1:1000). Then, the membranes were washed with TBST three times and incubated with HRP-conjugated secondary antibodies (ImnunoWay, 1: 8000) at temperature for 1 h. The bands were visualized by using an ECL kit (Kangweishiji Biotechnology) and an Azure imaging Biosystem C300.
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5

Investigating ER Stress Pathways in Cellular Models

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Antibodies against NR3C1(#A2164), ATF6(#A0202), p-eIF2α(#AP0692), PINK1(#A7131), HRP Goat Anti-Mouse IgG(#AS003), HRP Goat Anti-Rabbit IgG(#AS014) were purchased from Abclonal. Antibodies against β-actin(#81115), p-IRE1(#27528), PERK (#20582), CHOP (#15204) were purchased from Proteintech. Antibodies against LC3B (E5Q2K) (#83506), P62 (E7M1A) (#16177) were purchased from Cell Signaling Technology. Antibody against BNIP3 (#ab109362) was purchased from Abcam.
Dexamethasone sodium phosphate injection (#20220855) was purchased from Sancai Shiqi Pharmaceutical Co.Ltd (Zhongshan, China). Ceapin-A7 (#E1099) was purchased from Selleck Chemicals. LV-NR3C1-RNAi (#16863-1) was purchased from Genechem (Shanghai, China).
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6

Western Blot Analysis of Endoplasmic Reticulum Stress

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Cells and tissues were lysed in radioimmunoprecipitation assay (RIPA) lysis buffer (Solarbio, Beijing, China). Samples were then cleared by centrifugation (12,000 rpm, 15 min, 4  °C). Equal amount of proteins (10–20 μg) were separated by SDS-PAGE and transferred to polyvinylidene difluoride (PVDF) membranes (Millipore, Billerica, MA, USA). The following primary antibodies were used: iPLA2β (Santa Cruz Biotechnology, Dallas, TX, USA), GRP78 (Santa Cruz Biotechnology, Dallas, TX, USA), calnexin (Abclonal, Wuhan, China), p-IRE1α, ATF6 (Proteintech, Rosemont, IL, USA), ATF4 (Proteintech, Rosemont, IL, USA), p-PERK (Abclonal, Wuhan China), p-eIF2α (Abclonal, Wuhan, China), CHOP, cleaved caspase-3, Bax, p-CaMKII, SERCA2 (Santa Cruz Biotechnology, Dallas, TX, USA), β-actin (MultiSciences, Hangzhou, China), PERK (Abclonal, Wuhan, China), eIF2α (Abclonal, Wuhan, China), CaMKII and GAPDH (MultiSciences, Hangzhou, China). After incubation with the corresponding secondary antibodies conjugated with horseradish peroxidase (HRP) (MultiScience, Hangzhou, China), proteins were detected using a BioRad ChemiDoc MP Imaging system with enhanced chemiluminescence. All other antibodies were purchased from Cell Signaling Technology (Beverly, MA, USA).
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