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6 protocols using ab211017

1

Immunodetection of STAT1 and BKPyV in Cell Lines

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The rabbit recombinant monoclonal anti-IDO antibody (ab211017) was purchased from Abcam. The monoclonal antibody (mAb) for the detection of STAT-1 expression was purchased from Santa Cruz (C-136) and the mAb for the detection of phospho-STAT1 (Tyr701) expression was obtained from Cell Signaling (D4A7). The 3B2 monoclonal anti-BKPyV VP1 antibody, the rabbit anti-mouse IgG (whole molecule) peroxidase-labelled antibody and the mouse anti-rabbit IgG (whole molecule) peroxidase-labelled antibody were obtained from Calbiochem. Alexa 260 Fluor Plus 488-conjugated goat anti-Mouse IgG (H + L) was purchased from Thermo Fisher. Recombinant human IFN-gamma was purchased from Roche (100,000 IU; Switzerland) and recombinant human IFN-alpha and IFN-lambda 1 were obtained from PBL Assay Science. Pyridone-6 and the pharmacological IDO inhibitor IDO5L were obtained from Calbiochem and Fisher Scientific, respectively.
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2

Western Blot Analysis of Cellular Proteins

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Western blots were performed as described (Yang et al., 2019 (link); Yang et al., 2022 (link)) using the following antibodies against IDO1 (ab211017, Abcam), Flag (ab205606, Abcam), CD63 (ab217345, Abcam), CD81 (ab109201, Abcam), RUNX2 (ab23981, Abcam), Calnexin (#2433, CST) and GAPDH (AF2823, Beyotime). The whole protein was extracted by RIPA Lysis Buffer (Beyotime Biotechnology, China), and the concentration was detected by a BCA protein assay kit (Beyotime Biotechnology, China). Cell lysates were kept on ice for 30 min and centrifuged at 16,000 g for 3–5 min at 4°C. Supernatants were collected and boiled in SDS loading buffer, and the same amounts of protein were separated by 10% SDS-PAGE and blotted onto polyvinylidene fluoride membranes (Millipore, United States of America). Bands were visualized using chemiluminescence.
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3

Immunohistochemical Analysis of IDO1 Expression in Bladder Cancer

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Human bladder cancer and adjacent normal tissues were fixed in cold 4% paraformaldehyde. The fixed tissue samples were embedded in paraffin and sliced into 4-μm–thick sections. Following routine rehydration, antigen retrieval, and blocking procedures, the sections were incubated overnight with IDO1 antibody (1:1000 dilution, 1:1000, ab211017, Abcam, USA) at 4°C. Next, the sections were incubated with biotinylated goat anti-rabbit antibody IgG for 20 minute at room temperature and then with streptavidin–horseradish peroxidase for 30 minutes. Subsequently, diaminobenzidine-H2O2 was used as a substrate for the peroxidase. Two pathologists read the pathological sections and determined positive results when the cytoplasm of the cancer cells was stained yellow. The proportion of positive cells was evaluated by five fields of view, regardless of the intensity of staining. We divided the expression of IDO1 into two grades: a high-expression group with at least 50% of cancer cells being positive and a low-expression group with a percentage of positive cancer cells <50%.
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4

Western Blot Analysis of Protein Expression

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Total protein extracts of cell lines or tissues were prepared by using radioimmunoprecipitation assay buffer (Sigma-Aldrich) containing protease inhibitors. The protein concentration of lysates was quantified by using a bicinchoninic acid protein assay (Beyotime, China). For Western blotting, 20 μg of the protein sample was separated by electrophoresis on a 10% sodium dodecyl sulfate–polyacrylamide gel and was transferred to a nitrocellulose membrane (Sigma-Aldrich; Merck KGaA). Then, the membrane was blocked with 5% nonfat milk in PBS for 1 hour at room temperature and immunoblotted at 4°C overnight with a primary antibody against one of the following proteins: IDO1 (1:1000, ab211017, Abcam, USA), programmed cell death ligand 1 (PD-L1) (1:1000,ab213524, Abcam), STAT3 (1:1000,ab68153, Abcam), p-STAT3 (1:1000,ab76315, Abcam), E-cadherin (1:5000ab40772, Abcam), N-cadherin (1:5000,ab76011, Abcam,), vimentin (1:5000,ab92547, Abcam), and actin (1:5000,sc- 47778, Santa Cruz Biotechnology, Dallas, TX), which was used as an internal control. Subsequently, the membranes were incubated with fluorescence-conjugated secondary antibody (926-6807 or 926-32210; LI-COR Biosciences, Shanghai, China) for 1 hour at room temperature. The labeled protein bands were visualized and quantified by using the Odyssey two-color infrared laser imaging system (LI-COR Biosciences, Lincoln, NE, USA).
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5

Immunohistochemical analysis of IDO1 and Ki67

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Immunohistochemistry analysis was performed as described previously (Yang et al., 2019 (link); Du et al., 2021 (link)). Samples were fixed in 4% paraformaldehyde (PFA), paraffin-embedded and cut into 4–6 μm slides. All slides were dehydrated in gradient ethanol. Following the antigen retrieval done in 10 mM citrate buffer pH 6.0 (Na3H6H5O7, Beyotime, China), blocking was done using PBS with 10% normal goat serum (Sigma-Aldrich, United States of America) for 40 min. Slides were incubated overnight at 4°C with primary antibodies of IDO1 (ab211017, Abcam) or Ki67 (sc-23900, Santa Cruz). Slides were then incubated with goat anti-rabbit secondary antibody (G-21234, Thermo Fisher Scientific) or goat anti-mouse secondary antibody (G-21040, Thermo Fisher Scientific), stained using 3,3-diaminobenzidine solution and counterstained with hematoxylin.
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6

Protein Expression Analysis in Cell Lysates

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The total proteins were extracted from cells by RIPA lysis buffer (Beyotime) with phenylmethanesulfonyl fluoride (PMSF; Beyotime) and then separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE; Beyotime) transferring to polyvinylidene difluoride membranes (PVDF; Millipore, MA, USA). Primary antibodies against type I collagen (COL1) (1:1000, Bioss, Beijing, China), runt-related transcription factor-2 (RUNX2) (1:1000, 12556, CST, MA, USA), ALP (1:1000, ab67228, Abcam), NRF2 (1:1000, ab62352, Abcam), NAD(P)H quinone oxidoreductase 1 (NQO1) (1:10,000, ab80588, Abcam), CD206 (1:1000, ab125028, Abcam), iNOS (1:1000, 18985-1-AP, Proteintech, Wuhan, China), IDO (1:1000, ab211017, Abcam), IL-1β (1:1000, A1112, Abclonal), AhR (1:1000, ab190797, Abcam), PCNA (1:500, bs-0754R, Bioss), GAPDH (1:2000, Bioss) were used. The secondary antibody goat anti-rabbit IgG H&L (HRP) (1:5000, ab205718, Abcam) was used. The images were detected by using ChemiDocTM MP Imaging System (Bio-Rad, USA).
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