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4 protocols using anti suz12

1

Investigating EBNA3 Protein Interactions

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Western blots and immunoprecipitations were performed as described previously (12 (link)). Antibodies for western blot were anti-EBNA3A (Abcam, ab16126, 1:1000 dilution), anti-EBNA3B (clone 6C9, Allday lab, E. Kremmer (39 (link)), 1:10 dilution), anti-EBNA3C (clone A10, gift from M. Rowe, University of Birmingham, 1:10 dilution), anti-γ-tubulin (Sigma, T6557, 1:8000 dilution), anti-BMI1 (Millipore, 05–637, 1:1000 dilution), anti-SUZ12 (Santa Cruz Biotechnology, sc-46264, 1:1000 dilution), anti-CBX4 (Santa Cruz, sc-517216, 1:1000 dilution) and anti-MEL18 (Abcam, ab5267, 1:1000 dilution). Antibodies for immunoprecipitations were anti-BMI1 (Bethyl Laboratories, A301-694A, 2 μg) and DYKDDDDK Tag antibody (NEB, 2368, 2 μg). RNA extraction was performed using Qiagen’s RNeasy mini kit, according to the manufacturer’s instructions. cDNA was obtained using Invitrogen’s SuperScript III First Strand Synthesis Supermix. QPCR for cDNA and DNA from ChIP was performed using Platinum SYBR green QPCR Supermix uracil DNA glycosylase (UDG) kit (Invitrogen), as described previously (12 (link)). Primers for STK39 (8 (link)), AICDA (40 (link)) and COBLL1 (10 (link)) loci and expression have been described before. All the oligonucleotide primers used are listed in Supplementary Table S1.
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2

Pluripotency Protein Analysis Protocol

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Smc3 (Abcam, Ab9263), Sall4 (Abcam, Ab29112), Wapal (Abcam, Ab70741), Scc1/Rad21 (Abcam, Ab992), Nanog (Millipore, AB5731), GAPDH-HRP (Santa Cruz, sc-25778), total H3 (Active Motif, 61278), H3K27me3 (Millipore, 07-449), H3K4me3 (Active Motif, 39916), anti-Brachyury (Santa Cruz, sc-17743), anti-v5 (Invitrogen, 46-0708), Streptavidin–HRP (Invitrogen, SA1007), anti-Suz12 (Santa Cruz, sc-46264), anti-Ezh2 (Millipore, 17-662), anti-Ring1b (Western Blot-Active Motif, 39664; ChIP-seq Abcam, Ab101273), anti-H2Aub1 (Cell Signaling, 8240).
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3

Western Blot Analysis of Epigenetic Markers

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Pathological and Western blot analyses were performed as previously described38 (link). Antibodies used for Western blot included anti-EED, anti-EZH2, and anti-monomethyl-Histone H3 (Lys27) (Merck Millipore, Billerica, MA, USA); anti-dimethyl-Histone H3 (Lys27), anti-trimethyl-Histone H3 (Lys27), and anti-histone H3 (Cell Signaling, Danvers, MA, USA); and anti-SUZ12 (SantaCruz Biotechnology, Santa Cruz, CA, USA).
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4

Western Blot Analysis of Protein Expression

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Samples were separated on a 10% sodium dodecyl sulphate‐polyacrylamide gel electrophoresis (SDS‐PAGE) and transferred onto nitrocellulose membranes and then blocked in 10% dry milk‐TBST (20 mmol/L Tris‐HCl [PH 7.6], 127 mmol/L NaCl, 0.1% Tween‐20) for two hours at 37°C. Following three washes in Tris‐HCl pH 7.5 with 0.1% Tween 20, the blots were incubated with primary antibody overnight at 4°C. Following three washes, membranes were then incubated with secondary antibody overnight at 4°C. Primary antibodies include the following: anti‐glypican‐3 (Abcam), anti‐PCNA (Abcam), anti‐METTL3 (Abcam), anti‐histone H3 (Abcam), anti‐H3K9me3 (Abcam), anti‐JMJD2A (Santa Cruz, Biotech), anti‐Pim1 (Santa Cruz, Biotech), pHistone H3 (Abcam), anti‐SUZ12 (Santa Cruz, Biotech), anti‐SUV39H1 (Santa Cruz, Biotech), anti‐Nanog (Abcam), anti‐MEKK4 (Abcam), anti‐pTyr (Abcam). Signals were visualized by enhanced chemiluminescence plus kit (GE Healthcare) according to our pervious protocol.34
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