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7 protocols using cd62l clone mel 14

1

Immune Cell Profiling in Murine Super-Infection

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Whole blood was collected from mice on days −1, 3, 7 and 9 post‐super‐infection. Blood was collected in 0.5 M EDTA, then lysed using ACK Lysis buffer, washed and resuspended in flow cytometry buffer (2% FCS + 0.5 mM EDTA in PBS). Single‐cell suspensions were blocked with anti‐CD16/32 antibody and stained with fluorochrome‐conjugated antibodies against mouse CD3 (clone 17A2; Biolegend, San Diego, CA, USA), CD4 (clone GK1.5, Biolegend), CD8 (clone 53‐6.2, BD Biosciences, Franklin Lakes, NJ, USA), CD45 (clone 30‐F11, BD Biosciences), CD11b (clone M1/70, BD Biosciences), IA/IE (M5/114; eBioscience, San Diego, CA, USA), Ly6G (clone 1A8, BD Biosciences), CD62L (clone MEL‐14, BD Biosciences) and CD69 (clone H1.2F3, BD Biosciences), and dead cells were excluded using LIVE/DEAD Near‐Infrared viability dye (#L110909, Thermo Fisher Scientific). Sphero™ Blank Calibration Particles (BD Biosciences) were added to the samples and used as reference counting beads. Cells were acquired on a BD LSR II Fortessa Cell Analyser, and data were analysed using FlowJo software (v10.6; Treestar, Inc.).
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2

Comprehensive Immune Cell Analysis

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Spleens and cLNs were harvested and dissociated by mechanical dispersion. Following RBC lysis with ACK Lysis Buffer (Lonza), cells were incubated with Fc block (CD16/32, clone 2.4G2, BD Biosciences) and treated with antibodies directed against the following as indicated: B220 (clone RA3-6B2, BD Biosciences), CD23 (clone B3B4, Biolegend), CD21/35 (clone 7G6, BD Biosciences), T-bet (clone 4B10, BD Biosciences), CD11c (clone HL3, BD Biosciences), CD4 (clone GK1.5, BD Biosciences), CD8α (clone 53-6.7, BD Biosciences), CD44 (clone IM7, BD Biosciences), CD62L (clone MEL-14, BD Biosciences), CD138 (clone 281-2, BD Biosciences), CD69 (clone H1.2F3, Biolegend), and TLR7 (clone A94B10, BD Biosciences). Data were acquired using a BD Biosciences Fortessa and analyzed with FlowJo software (BD Biosciences).
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3

Comprehensive Immune Cell Phenotyping

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The following antibodies were used for staining sections for imaging or isolated cells for flow cytometry: collagen-IV (rabbit polyclonal; Abcam), gp38 (clone 8.1.1; eBioscience), PNAd (clone Meca-79; BD Biosciences), ER-TR7 (clone sc-73355; Santa Cruz Biotechnology), CD11c (clone N418 or HL3; BioLegend), Lyve1 (clone Aly7; eBioscience), SIRPa (clone P84; BD Biosciences), CD11b (clone 5C6; AbD Serotec; clone M1/70; BioLegend), Y-Ae (clone eBioY-Ae; eBioscience), CD45.2 (clone 104; BioLegend), MHC II (clone M5/114.15.2; BioLegend), CD205 (clone NLDC-145; BioLegend), CD207 (clone 929F3.01; Dendritics), CD3 (clone 17A2; BioLegend), CD69 (clone H1.2F3; BioLegend), CD62L (clone Mel-14; BD Biosciences), CD8 (clone 53-6.7; BioLegend), IFNγ (clone XMG1.2; eBiosciences), CD127 (clone A7R34; BioLegend), and KLRG1 (clone 2F1; eBiosciences).
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4

Immune Cell Isolation and Phenotyping

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Spleens and brains were harvested at indicated days p.i. Brains were minced and digested with collagenase (100 U/ml in DMEM with 2% FBS, 200 U/ml penicillin, 200 g/ml streptomycin, 2 mM L-glutamine, 5 μM HEPES, 1 μM MgCl2, 1 μM CaCl2) for 30 min at 37°C, passed through a 70 μm nylon cell strainer (BD Biosciences). Cells were isolated by centrifugation on a 44%:66% Percoll gradient. Spleens were passed through a 70 μm nylon cell strainer, then treated with ACK buffer (0.15 M NH4Cl, 1mM KHCO3, 1mM Na2EDTA, pH 7.0) to lyse RBCs. Cells were surface-stained in FACS Buffer (PBS, pH 7.2 with 1% BSA, 0.1% sodium azide) for 30 min at 4°C with mAbs to CD8α (clone 53–6.7; Biolegend), CD44 (clone IM7; eBioscience), CD45.1 (clone A20; Biolegend), CD62L (clone MEL-14; BD Biosciences), CD69 (clone H1.2F3; BD Biosciences), PD-1 (clone RMP1-30; Biolegend), CD11a (clone 2D7; BD Biosciences), CD49d (clone MFR4.B; BioLegend), KLRG1 (clone 2F1; BD Biosciences), and CD127 (clone AFR34; Biolegend). Samples were collected on a BD LSR Fortessa or FACSCanto10 flow cytometer. Fluorescence-minus-one (FMO) samples were used to set positive gates for each surface molecule examined.
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5

Comprehensive T Cell Immunophenotyping

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All antibodies were purchased from BioLegend except where otherwise noted. Following isolation, cells were stained with fluorochrome-conjugated antibodies against mouse CD3 (clone 17A2), CD4 (clone GK1.5), CD8 (clone 53-6.7), CD44 (clone 1M7), CD62L (clone Mel-14), and T cell receptor Vβ8.3 (clone 1B3.3) (BD Biosciences) along with anti-FcRγ (Bio X Cell, West Lebanon, NH) and a LIVE/DEAD Fixable Aqua Dead cell stain kit to exclude dead cells (Invitrogen). To assess T-bet+ expression, a subset of skewed cells were fixed and permeabilized using an Invitrogen transcription factor fixation/permeabilization kit (Invitrogen) and staining with an anti-T-bet antibody (clone 4B10). AccuCheck counting beads (Invitrogen) were used to determine absolute cell counts. Data were collected on an LSR II flow cytometer (BD Biosciences) and were analyzed using FlowJo (Tree Star, Ashland, OR).
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6

Multiparametric Immune Cell Profiling

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For surface staining, splenocytes and isolated immune cells from spleen, muscle, and lymph node tissues were stained for 15 min at room temperature with antibodies against the following proteins: CD4 (clone GK1.5, 863 eBioscience; clone H129.19, BioLegend, CA, USA), CD8 (clone 53-6.7, BD Biosciences; clone 53-6.7, Invitrogen, CA, USA), CD44 (clone IM7, Invitrogen), CD62L (clone MEL 14, BD Biosciences), CD11b (clone M1/70, Bio Legend), F4/80 (clone BM8, Invitrogen), CD86 (clone GL1, BD Biosciences), and CD11c (clone N48, eBioscience). Cells were fixed with 1% paraformaldehyde, analyzed using a FACS Canto II flow cytometer (BD Biosciences, NJ, USA), and the data were analyzed using FlowJo software (TreeStar, OR, USA).
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7

Multicolor Flow Cytometry of Neutrophils

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Flow cytometry was performed on the Attune NxT Flow Cytometer (Life Technologies, CA, USA). Cells were first gated for doublet exclusion [forward scatter height (FSC-H) vs. forward scatter area (FSC-A)] followed by side scatter height (SSC-H) vs. FSC-H gating. Cell viability was checked by negative gating of cells stained with “Live/Dead Fixable Aqua Dead Cell Staining Kit” (Life Technologies, CA, USA). Neutrophils were analyzed by detecting the surface antigens with the following antibodies: Ly6G (clone 1A-8, BD Biosciences, CA, USA), CD11b (clone M1/70, Biolegend, CA, USA), CD54 (clone 3E2), and CD62L (clone MEL-14) from BD Pharmingen, CA, USA; or total antigens (surface and intracellular) by antibodies: CXCR4 (clone L276F12) and CXCR2 (clone SA045E1) from Biolegend, CA, USA; or by intracellular labeling with antibodies: Arg-1 (clone A1exF5) and inducible nitric oxide synthase (iNOS) (clone CXNFT) from Invitrogen, MA, USA. Cells were fixed with 1% paraformaldehyde and permeabilized with Saponin buffer [0.1% Saponin (w/v), 0.1% bovine serum albumin (BSA), 0.01 M HEPES, and 0.1% sodium azide in phosphate-buffered saline (PBS)] prior to the intracellular labeling as described previously (18 (link)).
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