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Moloney murine leukemia virus rt

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The Moloney murine leukemia virus Reverse Transcriptase (M-MLV RT) is an enzyme that catalyzes the conversion of single-stranded RNA into double-stranded complementary DNA (cDNA). This process, known as reverse transcription, is a fundamental step in various molecular biology applications, such as gene expression analysis and cDNA library construction.

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7 protocols using moloney murine leukemia virus rt

1

RNA Isolation and RT-PCR Analysis

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Total RNA was isolated using the Isolate II RNA mini kit (Bioline, Taunton, MA, USA), treated with DNase (Bioline) and reverse transcribed using an oligo(dT) primer and Moloney murine leukemia virus RT (Promega, Madison, WI, USA). Primers and RT-PCR conditions can be found in the supplemental data. Data were analyzed using the comparative Ct method.
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2

Extracting Total RNA from Bone Marrow

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The TRIzol reagent (Invitrogen, Buenos Aires, Argentina) was used to extract the total RNA of the mononuclear cells obtained from the bone marrow of the patients and the healthy control subjects. RT-PCR was performed with 1X reverse transcription (RT) buffer (Promega, Madison, WI, USA), 200 U/µL Moloney murine leukemia virus RT (Promega), 250 ng/µL random primer (Promega), and 10 mmol/L of each dNTP (Invitrogen). The cDNA synthesis with 1 µg of the total RNA was processed in a total volume of 20 µL for 10 min at 95 °C, 60 min at 37 °C, and 10 min at 95 °C to inactivate the enzyme. The obtained cDNA was stored at -20 °C until use.
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3

RNA Isolation and Real-Time qPCR for Hepatocyte Genes

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RNA isolation from Huh7 cells was performed with TRIzol reagent (Invitrogen) according to the manufacturer’s instructions. DNA digestion was performed with RQ1 RNase-Free DNase (Promega). RNA isolation from PHHs was performed with NucleoSpin RNA II (MACHEREY-NAGEL) according to the manufacturer’s instructions. 1 µg RNA was reverse transcribed with random hexamers and Moloney murine leukemia virus RT (Promega). Real-time qPCR was performed with SYBR green fluorescence (Applied Biosystems) and an ABI 7500 detection system (Applied Biosystems). Primers used for real-time qPCR are listed in Table S4. The IL28A gene shares 97% sequence similarity with the IL28B gene; therefore, we designed primers that specifically recognize both genes. The specificity of the PCR was assessed on 3% agarose gel. For in vitro experiments, gene expression was normalized to human GAPDH expression using the ΔCt method. For analysis in bulk tissues, gene expression was quantified using cloned cDNA (a gift from R. Hartmann, Aarhus University, Aarhus, Denmark) as standard, and results are shown as copies per 40 ng of total RNA. Complete gene expression data from PHH samples are listed in Table S1. Complete gene expression data from CHC patients are listed in Table S2.
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4

Isolation and Analysis of Granulocyte and Monocyte RNA

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Total RNA of human granulocytes and monocytes was isolated using the RNeasy Mini Kit System (Qiagen, Venlo, The Netherlands), treated with RNA-free DNase (Promega, Madison, WI) and reverse transcribed using oligo(dT) primers and Moloney murine leukemia virus RT (Promega). Primers and RT-PCR conditions can be found in the online supplement (see Table S1, Supplemental Digital Content 1, at http://links.lww.com/SHK/A387). Data were analyzed using the comparative Ct method.
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5

Isolation and Purification of RNA from Horse Skeletal Muscle

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Horse skeletal muscle tissue (~50 to 100 g) was crushed using a mortar, and ground muscle tissue was then dissolved using 1 mL TRIzol (Invitrogen, Karlsruhe, Germany). Next, 200 μL of chloroform was added to remove cells from the organic solvent, the mixture was shaken for 10 s, maintained at 4°C for 5 min, and centrifuged at 4°C for 15 min. The supernatant was removed and added to a new test tube, mixed with an equal amount of isopropanol, and maintained at 4°C for 15 min to collect RNA pellets. Isopropanol was removed from the solution via centrifugation at 4°C for 15 min, and the sample was then sterilized with 85% ethanol and dissolved in RNase-free water. The purity of the extracted RNA was confirmed by measuring absorbance at 230 nm and 260 nm using a spectrophotometer (ND-100, Nanodrop Technologies Inc., Wilmington, DE, USA), and only RNA samples with purity (optical density value of 230 nm/260 nm) measurements greater than 1.8 were selected and stored at −70°C until the experiment was carried out.
To synthesize cDNA, 1 μg of RNA and 1 μL each of oligo-dT (Invitrogen, USA) and RNase-free water were added. RNA was denatured at 80°C for 3 min, and cDNA was synthesized using 4 μL of 5×RT (reverse transcription) buffer, 5 μL of 2 mM dNTPs, 0.5 μL of RNase inhibitor (Promega, Madison, WI, USA), and 1 μL of moloney-murine leukemia virus RT (Promega, USA).
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6

Quantifying mRNA Levels in INS-1E Cells

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Total RNA from INS-1E cells were isolated using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) according to the instructions of the manufacturer. RNAs were transcribed to cDNA at 42°C for 1 hour in a 25 μl cocktail containing 5× reverse transcriptase (RT) buffer, 10 mM dNTPs (200 units), Moloney murine leukemia virus RT (Promega, Madison, WI, USA), and 100 pm oligo-dT primer. After the termination of cDNA synthesis, the mRNA levels of target genes were determined by quantitative RT-PCR as described previously [24 (link)]. The relative amounts of the mRNA levels of the target genes were normalized to β-actin, and the relative difference in mRNA levels was calculated by the 2-ΔΔCt method. The sequences of primers and reaction conditions used are listed in Table S1 and Table S2.
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7

RNA Isolation and cDNA Synthesis

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Total RNA was isolated from 5 g of frozen fruit using the 2butoxyethanol method [26] , treated with DNAase I (Promega) and then purified with chloroform:octanol (24:1). First strand of cDNA was obtained by using the following mixture: 1 g of total RNA, 0.03 mM dNTPs, 1 l of Moloney murine leukemia virus RT (200 U l -1 ; Promega), 5 l of 5× reaction buffer (250 mM Tris-HCl, 375 mM KCl, 15 mM MgCl 2 , 50 mM DTT, pH = 8.3), 330 pmoles of random primers (Biodynamics S.R.L., Buenos Aires, Argentina) and distilled water up to a total volume of 25 l. The reaction mixture was incubated during 1 h at 38 • C and 5 min at 95 • C. Five independent RNA extractions were performed for each condition evaluated.
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