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26 protocols using anti pser473 akt

1

Protein Interaction and Modification Analysis

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Anti-EGFR, GAPDH and 14-3-3ζ were from Santa Cruz Biotechnology. Anti-Pan-AKT, anti-AKT pSer473, anti phosphoEGFR antibodies were from Cell Signaling Technology. HA-peroxidase and anti-PTP1B (FG6) was from Millipore. PT-66-agarose-conjugated beads, anti-FLAG M2 beads, and anti-HA beads and anti-Flag M2 peroxidase were purchased from Sigma. Anti-PTP1B pSer50 (Ab62320) were from Abcam. Streptavidin-HRP was from GE Healthcare. HRP-conjugated secondary antibodies were from Jackson ImmunoResearch Laboratories, Inc. Protease inhibitor mixture tablets were from Roche. Catalase and superoxide dismutase were from Calbiochem. Surfact-Amps Nonidet P-40, zeba desalt spin columns, EZ-Link biotin-iodoacetyl-PEG2 (biotin-IAP), and iodoacetic acid were from ThermoScientific. The pTyr loop-derived peptide (CKNRNRYRDVS) and phospho-Ser50 pTyr loop-derived peptide (CKNRNRYRDVpS) were from GenScript USA Inc. BIACore sensor NTA and Streptavidin chips were from GE healthcare.
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2

Quantitative Protein Analysis Protocol

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Protein analysis was performed as previously described (Chen et al., 2021a (link)). In brief, total cell lysates were prepared in lysis buffer containing 8 M urea, 2 M thiourea, 3% SDS, 75 mM DTT, 0.05 M Tris-HCl [pH 6.8], and 0.03% bromophenol blue. Lysates from equal numbers of cells for each condition were subjected to SDS-PAGE and analyzed by Western blotting using the following antibodies: anti-IP3R1 (Ouyang et al., 2014 (link)), anti-IP3R2 (Ouyang et al., 2014 (link)), anti-IP3R3 (BD Biosciences, 610312), anti-MEF2C (Abcam, ab211493), anti-c-Myc (Cell Signaling Technologies, 5605), anti-panAkt (Cell Signaling Technologies, 4691), anti-Akt p-Ser473 (Cell Signaling Technologies, 4060), anti-S6 p-Ser235/236 (Cell Signaling Technologies, 4858), anti-β-actin (Santa cruz, sc-47778), and Total Oxphos Rodent WB antibody cocktail (Abcam, ab110413). Proteins were visualized using an HPR-conjugated anti-mouse or anti-rabbit secondary antibody (Cell Signaling Technologies) and chemiluminescent ECL reagent (Thermo Fisher). Densitometric quantification was performed using ImageJ.
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3

SDS-PAGE and Western Blotting Analysis

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We performed SDS-PAGE and Western blotting as previously described.(21 (link)) Briefly, cells were collected and lysed in modified RIPA buffer following sonication using a Bioruptor 2 (Sonic Bio Inc., Kanagawa, Japan). Proteins were separated by SDS-PAGE and transferred onto a PVDF membrane (Immobilon-P, Millipore Corp., Bedford, MA). Transfer conditions were 100 V in Towbin buffer (25 mM Tris, 192 mM glycine, 1% SDS, and 20% methanol) for 60 min at 4°C. The membrane was probed with specific antibodies diluted with TBST [10 mM Tris-HCl (pH 7.4), 0.1 M NaCl and 0.1% Tween-20] containing 5% BSA or skim milk, overnight at 4°C. After probing with horseradish peroxidase (HRP)-conjugated secondary antibodies, bound antibodies were detected with Immobilon Western HRP substrate. Densitometry was performed using ImageJ software (NIH, Bethesda, MD). For Western blotting, we used anti-Akt (Cat. No. #4691S, Cell Signaling Technology, Beverly, MA), anti-Akt-pSer473 (Cat. No. #4060S), anti-β-Actin-Peroxidase (Cat. No. A3854, Sigma-Aldrich), and goat anti-rabbit IgG(H+L) (Cat. No. #A16110, Thermo Fisher Scientific, Tokyo, Japan) as HRP-conjugated secondary antibodies. Immobilon Western HRP substrate was purchased from Merck Millipore (Billerica, MA).
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4

Immunostaining and Confocal Imaging

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Cells were fixed with 4% PFA for 20 min at room temperature, or with methanol for 10 min at −20 °C, then cyto-centrifuged onto coverslips. Fixed cells were permeabilized and blocked for 30 min in PBS supplemented with 0.1% saponin and 3% bovine serum albumin, and then incubated with a primary and a secondary antibody for 1 h each. To stain with anti-Akt(pSer473) (Cell Signaling Technology; 193H12), 10% skimmed milk was used for blocking. After washing with PBS, cells were mounted with Fluomount (DiagnosticBioSystems). For staining endocytic compartments, cells were incubated for 1 h with 5 μg ml−1 AF647-CTXB or 1 mg ml−1 AF647-dextran (Molecular Probes). Confocal images were obtained by a Fluoview FV10i laser scanning microscope with an x60 1.20 N.A. water-immersion objective (Olympus). Composite figures were prepared with Photoshop elements 10 and Illustrator CS6 software (Adobe). Pearson’s correlation coefficients (Pearson’s R) were calculated with NIH ImageJ Version 1.48v software.
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5

Western Blot Analysis of Cell Signaling

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Cells were directly lysed by RIPA lysis buffer (Beyotime) on ice, and proteins were separated by SDS-PAGE gels. Separated proteins were transferred to a PVDF membrane (Millipore), and the membrane was incubated for 1 h in TBS buffer (20 mM Tris–HCl pH 7.5, 500 mM NaCl) containing 5% BSA and 0.1% Tween 20 at room temperature. The membranes were incubated with primary antibody overnight at 4 °C and subsequently washed three times with TBS buffer containing 0.1% Tween 20. Then, the membranes were incubated with HRP secondary antibody for 1 h at room temperature. After washing and incubation with HRP substrate, signals were detected by an Amersham Imager 600 (GE). The following antibodies were used: anti-Pp6 (Millipore/Santa Cruz), anti-Akt (Cell Signaling Technology), anti-Akt-pSer473 (Cell Signaling Technology), anti-Akt-pThr308 (Cell Signaling Technology), anti-Actin (Beyotime), anti-pStat5 (Cell Signaling Technology), anti-FoxP3 (Abcam), anti-pJak3 (Cell Signaling Technology), anti-pSmand2/3 (Cell Signaling Technology), and anti-Smand2/3 (Abcam).
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6

Protein Interaction and Modification Analysis

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Anti-EGFR, GAPDH and 14-3-3ζ were from Santa Cruz Biotechnology. Anti-Pan-AKT, anti-AKT pSer473, anti phosphoEGFR antibodies were from Cell Signaling Technology. HA-peroxidase and anti-PTP1B (FG6) was from Millipore. PT-66-agarose-conjugated beads, anti-FLAG M2 beads, and anti-HA beads and anti-Flag M2 peroxidase were purchased from Sigma. Anti-PTP1B pSer50 (Ab62320) were from Abcam. Streptavidin-HRP was from GE Healthcare. HRP-conjugated secondary antibodies were from Jackson ImmunoResearch Laboratories, Inc. Protease inhibitor mixture tablets were from Roche. Catalase and superoxide dismutase were from Calbiochem. Surfact-Amps Nonidet P-40, zeba desalt spin columns, EZ-Link biotin-iodoacetyl-PEG2 (biotin-IAP), and iodoacetic acid were from ThermoScientific. The pTyr loop-derived peptide (CKNRNRYRDVS) and phospho-Ser50 pTyr loop-derived peptide (CKNRNRYRDVpS) were from GenScript USA Inc. BIACore sensor NTA and Streptavidin chips were from GE healthcare.
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7

Quantitative Western Blot Analysis of Neuronal Markers

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Sciatic nerves, DRGs, and spinal cord were sonicated and homogenized in RIA lysis buffer (50 mmol/l Tris–Cl pH 7.4, 150 mmol/l NaCl, 1 mmol/l ethylenediaminetetraacetic acid, 1% NP-40, and 0.25% sodium deoxycholate) and Complete Mini EDTA-free protease inhibitor cocktail tablets (Roche Diagnostics). Protein concentration was determined by BCA Protein Assay (Pierce, Rockford, IL), and 50 µg of proteins were separated on 10% sodium dodecyl sulfate–polyacrylamide gel electrophoresis gel (Bio-Rad, Hercules, CA). Polyvinylidene fluoride membranes were incubated with anti-VEGF (1:200; Abcam), anti-Akt-P (Ser473) (1:500; Cell Signaling Technology, Danvers, MA), anti-GAP-43 (1:500; Millipore) and anti-P0 (1:500; Abcam), and anti-rabbit conjugated to horseradish peroxidase (1:2,000; DakoCytomation) combined with western blotting detection reagent (ECL Plus; Amersham, Freiburg, Germany) according to the manufacturer’s instructions. The same membranes were stripped and incubated with anti-actin (1:500; Sigma-Aldrich) and anti-total Akt (1:500; Cell Signaling Technology). Band pixel intensities were quantified by GeneSnap software for Gene Genius Bio Imaging System (Syngene, Cambridge, UK) and normalized by anti-actin levels in each line and by anti-total Akt levels for Akt-P samples.
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8

Antibodies and Markers for Cellular Imaging

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Rabbit anti-mouse lyve-1 antibody (RDI-103PA50) was from Research Diagnostics Incorporated (Concord, MA). Donkey anti-rabbit and rat IgGs conjugated with alexa 488, 594 were from TebuBio (TebuBio, Le Perray en Yvelines, France). Anti-pSer473Akt, anti-Akt, anti-pErk, anti-Erk1/2 are from Cell Signalling Technology. Anti-Phalloidin was from Cytoskeleton (actin-stain phalloidin 488, cat PHDG1). Anti-phospho-VEGFR-3 is from Cell applications Inc. Rabbit anti-human LC3B, anti-human Notch/NCID and anti-p62 were from Cell Signaling (#2775), Goat anti-human VE-Cadherin from Santa-Cruz ((C19):SC6458) and Rabbit anti-human ATG5 and ATG7 from Sigma. Anti-human active beta-catenin was from Milliopore.
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9

Western Blot Analysis of Phosphorylated Proteins

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The ipsilateral cortex tissue of the mouse brain was homogenized in prechilled buffer containing 50 mM Tris-HCl (pH 7.4), 2.0 mM EGTA, 2 mM Na3VO4, 50 mM NaF, 0.5 mM AEBSF, 10 μg/ml aprotinin, 10 μg/ml leupeptin, and 4 μg/ml pepstatin A. Protein concentrations of the homogenates were determined by using Pierce 660 nm Protein Assay kit (Thermo Fisher Scientific Inc.). The samples were resolved in 10% sodium dodecyl sulfate (SDS)-polyacrylamide gel electrophoresis (PAGE) and electrotransferred onto PVDF membrane (Millipore, Bedford, MA). After blocking with 5% fat-free milk, the blots were then probed with a primary antibody, such as VEGF (1 : 1000; Abcam, USA), anti-AKT (1 : 1000; Cell Signaling Technology, USA), anti-pSer473-AKT (1 : 1000; Cell Signaling Technology, USA), anti-pSer9-GSK3β (1 : 1000; Cell Signaling Technology, USA), anti-GSK3β (1 : 1000; Cell Signaling Technology, USA), or anti-GAPDH (1 : 2000; Sigma, USA),washed and then incubated with a corresponding HRP-conjugated secondary antibody. The protein-antibody complex was visualized by using the Pierce ECL Western Blotting Substrate (Thermo Scientific) and exposed to a HyBlot CL autoradiography film (Denville Scientific, Inc. Metuchen, NJ). Specific immunostaining was quantified by using the Multi Gauge software V3.0 (Fuji Photo Film Co. Ltd.).
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10

Immunofluorescence Visualization of pAkt in Cardiomyocytes

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Female and male syndecan-4−/− and WT isolated LV cardiomyocytes were fixed in 4% paraformaldehyde for 10 min, quenched in 150 mM glycine for 10 min and permeabilized with 0.5% Triton X-100 for 10 min, at room temperature. Cells were then plated on laminin coated (#L2020, mouse, Sigma Merck) glass bottom dishes (No 1.5, Ø 14 mm, γ-irradiated, Martek Corporation, United States). For visualization, cells were incubated with anti-pSer473-Akt (1:50, #9271, Cell signaling) overnight at 4°C, followed by secondary antibody labeling using goat anti-rabbit Alexa Fluor 647 plus (1:200, #32733, Thermo Fisher Scientific) for 1 h at room temperature. Wheat germ agglutinin (WGA) 488 (1:400, #W11261, Invitrogen) and DAPI 405 (0.1 mg/ml, #MBD0015, Sigma Aldrich) was included in the secondary step to visualize the sarcolemma and nuclei, respectively. Both primary and secondary antibodies were diluted in a blocking buffer consisting of 2% goat serum, 0.1% Triton X-100 and 0.02% NaN3 in PBS. Imaging was performed on a ZEISS LSM 800 with Airyscan using the Airyscan super-resolution mode, using a plan-apo 63X 1.4 NA oil objective.
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