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8 protocols using anti cd27 apc cy7

1

Quantification of CD19+ B Cells

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CD19+ B cell counts were determined on whole blood after red blood cell lysis using mAbs specific for CD19 (BD Bioscience, San Jose, CA). Absolute numbers of B cells were calculated based on patient white blood count and the immunophenotypic data. Phenotyping analysis of B cells was performed by labeling blood lymphocytes with titrated volumes of anti-CD24 FITC (BD biosciences), anti-CD38 PE (Beckman Coulter, Fullerton, CA), anti-CD27APC/Cy7 (Biolegend, San Diego, CA). Cells were analyzed using a FACSVerse flow cytometer (BD Biosciences). The flow cytometer calibrated by methods described previously12 (link).
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2

Multiparametric Immune Cell Profiling

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PBMC were washed with PBS and stained with anti-CD3-PE-Cy7 (Biolegend), anti-CD4-PerCP (BD Pharmingen), anti-CD8-PE (BD Pharmingen), anti CD28-APC (Biolegend), anti CD45RO-FITC (BD Pharmingen), anti-CD20-PerCP (Biolegend), anti-CD27-APC-Cy7(Biolegend) and anti-IgD-FITC (BD Pharmingen) antibodies for 20 min, 4 °C in the dark. After washing with PBS, cells were analyzed using a FACS Canto II cytometer and FACSDiva software (BD).
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3

Multiparametric Flow Cytometry Analysis of B Cell Subsets

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Cells were stained with panels of antibodies including anti-mouse CD19-pacific Blue, CD138-APC, CD21-PEcy7, CD5-FITC, CD43-PE, IgD-APCcy7, CD38-PE-Cy7, GL-7-Percp (BioLegend, San Diego, CA ), and IgM-APCcy7 (Miltenyi Biotec, Auburn, CA). For the human B cell phenotypes, the following antibodies were used: anti-CD19-pacific blue, anti-CD38-PECy7, anti- CD20-PE, anti-CD27-APCcy7 (BioLegend), and anti– human IgG-PE, anti– human IgA-APC (Miltenyi Biotec). BD Cytofix/ Cytoperm and BD Perm/Wash (BD) were used for IgA and IgG intracellular staining per manufacturers’ instructions. Data were analyzed on a BD Biosciences LSRII machine and Flowjo software 29.
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4

Isolation and Sorting of Tfh Cells and Naive B Cells

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PBMCs were separated by gradient centrifugation with a Lymphoprep (Axis-Shield; Oslo, Norway) according to the manufacturer’s instructions. CD4+ T cells and CD19+ B cells were enriched from PBMCs using a CD4+ T cell isolation kit and CD19+ B cell isolation kit, respectively (Miltenyi Biotec; Bergisch Gladbach, Germany) according to the manufacturer’s instructions. For sorting of Tfh cell subsets, enriched CD4+ T cells were stained with anti-CCR6-PE (11A9, BD Biosciences), anti-CXCR3-APC (1C6, BD Biosciences), anti-CXCR5-PerCP/Cy5.5 (J252D4, BioLegend), anti-CD45RA-BV421 (HI-100, BioLegend), and anti-CD4-HorizonV500 (RPA-T4, BD Biosciences). Tfh cell subsets were sorted from CD4+ T cells as Tfh2 (CXCR3-CCR6-), Tfh1 (CXCR3+CCR6-), or Tfh17 (CXCR3-CCR6+) cells among CXCR5+CD45RA-CD4+ T cells [19 (link)]. For sorting of naïve B cells, enriched CD19+ B cells were stained with anti-IgD-PE (IA6-1, Biolegend) and anti-CD27-APC/Cy7 (O323, BioLegend). Naïve B cells were sorted from CD19+ B cells as IgD+CD27-CD19+ cells. Tfh cell subsets and naïve B cell sorting was conducted with a FACS Aria III (BD Biosciences) according to the manufacturer’s instructions. Cell purity of naïve B cells determined by flow cytometry was greater than 98 % and cell purity was greater than 93 % for Tfh cell subsets.
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5

Isolation and Sorting of SARS-CoV-2 S-Specific Memory B Cells

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B cells, enriched from PBMCs with human CD19 MicroBeads (Miltenyi), were incubated with 2 μg/ml flag-tagged S protein or mixture of flag-tagged S protein (Genscript, Cat. Z03481) and His-tagged RBD (Chen et al., 2020 ) on ice for 30 minutes. Cells were then washed with 2% fetal bovine serum (FBS) (Hyclone) in PBS and stained with mixture of anti-human IgG (Percpcy5.5; Biolegend Cat. 410710), anti-human IgD (FITC; Biolegend Cat. 348205), anti-human IgM (Bv605; Biolegend Cat. 314524), anti-CD27 (APCcy7; Biolegend Cat. 356404). A mixture of PE- and APC-conjugated anti-flag antibodies (Biolegend Cat. 637309 and 637307) was also added for gating S-specific double positive cells, or a mixture of PE-conjugated anti-His (Biolegend Cat. 362603) and APC-conjugated anti-flag, for S positive and RBD negative cells. Memory B-cells were gated on DAPICD19+IgMIgDIgG+CD27+. Individual S double positive or S+RBD- cells were sorted with a FACSAria Fusion (BD Biosciences) into each well of 96-well microplates containing 4 μl/well of lysis buffer (0.5X PBS, 10 mM dithiothreitol, and 4U RNaseOUT). Lysed cells were immediately frozen and stored at −80 °C until use.
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6

Comprehensive PBMC Immunophenotyping Protocol

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Peripheral blood mononuclear cells (PBMCs) were stained in four panels containing anti-CD3-PacificBlue (PacBlue) (antibodies from BD Biosciences unless otherwise indicated), anti-CD3-Alexa700, anti-CD25-PE-Cy7, anti-CD38-PE, anti-HLA-DR-PE-Cy7, anti-CCR5-APC, anti-CD123-PerCP-Cy5.5, anti-CD16-PacBlue, anti-CD80-FITC, anti-CD83-PE, anti-CD86-APC, anti-PD1-FITC, anti-PD-L1-PE, anti-HLA class I-APC, anti-CD69-APC-Cy7; anti-CD4-Qdot655, anti-CD8-PE-Cy5.5, anti-CD14-Qdot605 (Invitrogen); anti-CD45RA-ECD, anti-CD127-PE, anti-HLA-DR-ECD, anti-CD20-ECD (Beckman Coulter); anti-CD11c-Alexa700 (eBioscience); and anti-CD27-APC-Cy7 (BioLegend). A staining reagent for dead cells (Invitrogen Aqua Live/Dead Fixable Stain) was included. Cells were then washed and fixed in PBS containing 1% paraformaldehyde or permeabilized using a FOXP3 Fix/Perm kit (BioLegend) according to the manufacturer's instructions, intracellularly stained with anti-Ki67-Alexa 488 (BD Biosciences), anti-FOXP3-PacBlue, anti-T-Bet-BV711 (BioLegend), and anti-Eomes-eFluor 660 (eBioscience), fixed, and analyzed with a LSR II cytometer (Becton Dickinson) and FlowJo.
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7

Phenotypic and Functional Profiling of T Cells

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For suppression assays, cells were washed with 0.1% (w/v) sodium azide/phosphate-buffered saline (Mediatech Cellgro) on day 7 of in vitro stimulation and were stained with anti-CD4 PECy5 (BD Pharmingen), anti-CD8 Pacific Blue (Biolegend), and anti-CD25 APCCy7 (BD Pharmingen. For surface phenotyping of cells, bulk PBMCs and enriched CD8+ T cells were stained with anti-CD3 Alexa 700 (BD Pharmingen), anti-CD8 AmCyan (BD Biosciences), anti-CD27 APCCy7 (Biolegend), anti-CD28 APC (BD Pharmingen), CD45RO Pacific Blue (Biolegend), anti-CD62L PECy5 (BD Pharmingen), and anti-CD57 PE (Southern Biotech). For intracellular staining of cytokines, cells were initially activated with 1 μL of leukocyte activation cocktail (BD Pharmingen) for 5 hours. Cells were surface stained with anti-CD8 APC (BD Biosciences), anti-CD4 PECy5 (BD Pharmingen) and anti-CD25 APCCy7 (BD Pharmingen) and permeabilized as described previously. Intracellular staining was performed using anti-IFNγ PECy7 (BD Pharmingen), anti-IL-17A PE (Ebioscience), anti-Granzyme B Alexa 700 (BD Pharmingen) and anti-Perforin Pacific Blue (BD Pharmingen). All cells were resuspended in 1% paraformaldehyde (Electron Microscopy Sciences, Hatfiled, PA) for FACS analysis. Flow cytometric data were acquired on a 4-Laser, 17-color LSRII using FACSDiva software (Becton Dickinson). CFSE was detected in the FITC channel on the LSR.
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8

Apoptosis Analysis of T Cell Subsets

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Peripheral blood mononuclear cells were cultured in media (RPMI containing 10% fetal bovine serum, 1% l-glutamine, 1% penicillin-streptomycin, and 1% HEPES) overnight. The next day cells were harvested, washed with staining buffer (PBS containing 1% BSA and 0.1% azide), and assessed for apoptosis using BD Pharmingin's Annexin V PE Apoptosis Detection Kit I. Antibodies used to stain T cells included anti-CD3 (Pacific Blue), anti-CD4 (Alexa Fluor 700), anti-CD62L (APC), anti-CD45RO (FITC; BD Pharmingen), and anti-CD27 (APC-Cy7; BioLegend). Antibodies and Annexin V PE were added to each tube in a working volume of 100 µL of 1× Annexin V Buffer. Cells were incubated at room temperature for 15 minutes before an additional 200 µL Annexin V Buffer was added to each flow tube to bring the final volume to 300 µL. Cells were immediately examined on an LSRII flow cytometer.
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