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Multisource rna miniprep kit

Manufactured by Corning
Sourced in United States

The Corning Multisource RNA Miniprep kit is a laboratory equipment designed for the rapid and efficient extraction and purification of total RNA from a variety of sample types. The kit utilizes a spin column-based method to isolate high-quality RNA suitable for downstream applications such as qRT-PCR, RT-PCR, and RNA sequencing.

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5 protocols using multisource rna miniprep kit

1

Quantifying Viral Burden by qRT-PCR

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Total RNA was isolated from infected cells using a Multisource RNA miniprep kit (Axygen catalog no. AP-MN-MS-RNA-250) and reverse transcribed to cDNA using an iScript cDNA synthesis kit (Bio-Rad catalog no. 1708890). The viral burden was quantified with qRT-PCR using iTaq Universal SYBR green supermix (Bio-Rad catalog no. 1725121) on the Bio-Rad CFX-96 Touch real-time detection system. Primer sequences are shown in Table S1 in the supplemental material. The amount of virus was normalized to the human GAPDH gene (GenBank accession no. NC_000012.12).
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2

Quantification of Gene Expression in Lung Tissue

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Lung tissue total RNA was isolated using a Multisource RNA Miniprep kit (Axygen, USA). The total RNA was reverse transcribed into cDNA using PrimeScript™ RT Master Mix (Perfect Real Time) Kit (Takara, China). qPCR was performed using an ABI Prism 7500 instrument following the SYBR-Green reagent protocol (Takara, China). Data were analyzed as fold change by the 2−ΔΔCt method. Primers used in this study are listed below: β-actin forward: 5′-gccaaccgtgaaaagatg-3′, β-actin reverse: 5′-tgccagtggtacgaccag-3′; Rras2 forward: 5′-gaccatggcttttgcttgct-3′, Rras2 reverse: 5′-tagcggggacattgaacgtg-3′; Ttll12 forward: 5′-gcatccagagagttcgcaga-3′, Ttll12 reverse: 5′-gggtctcgggtgtaacacag-3′; Nog forward: 5′-tgtacgcgtggaacgaccta-3′, Nog reverse: 5′-ggcttacacaccatgccctc-3′; Vangl2 forward: 5′-tgatccccgattgcttggtc-3′, Vangl2 reverse: 5′-ccagaccactcggctgttt-3′; Gli3 forward: 5′-atcagccctgctttgagctt-3′, Gli3 reverse: 5′-gatgggtctctgcgttggaa-3′; Trps1 forward: 5′-gagcagcagaggatctggag-3′, Trps1 reverse: 5′-cctagtctgctccccgtttg-3′; Tc1 forward: 5′- ctcttcgagtaagcccgtcc-3′, Tc1 reverse: 5′-gggctcgagttttctcctcc-3’.
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3

Quantifying Viral Genomes via RT-qPCR

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Total RNA was isolated either from homogenized mosquitoes or infected cell supernatant using a Multisource RNA Miniprep Kit (AP-MN-MS-RNA-250, Axygen) according to the manufacturer’s protocol. Total RNA was reverse transcribed to cDNA using an iScript cDNA Synthesis Kit (1708890, Bio–Rad) in a mixture of 1 μl of iScript Mix and 4 μl of RNA. Reverse transcription was performed at 25°C for 5 min, 46°C for 60 min and 95°C for 1 min. Viral genomes were then quantified by qPCR using iTaq Universal SYBR Green Supermix (1725121, Bio–Rad) according to the manufacturer’s protocol using 1 μl of cDNA for each reaction. RT–qPCR was performed on a Bio–Rad CFX-96 Touch Real-Time Detection System. The RT–qPCR cycle was set to 95°C for 2 min, 40 cycles of 95°C for 10 sec and 60°C for 30 sec, detection of melting curve and finally at 25°C for 2 min. Primer sequences are shown in S1 Table.
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4

Viral RNA Degradation Assay

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DENV (1×104 PFU) or ZIKV (1×104 PFU) was incubated with different concentrations of the CbAEs or GFP in a total volume of 1 mL for 1 hr at 37°C. The same amount of GFP expressed using the same vector and purified using the same procedure as CbAEs in replacement of CbAEs in the procedure served as negative controls. The mixtures were then treated with 1 μL of RNase A (GE101-01, Transgen) and incubated for 1 hr at 37°C. Viral RNA was extracted using a Multisource RNA Miniprep Kit (AP-MN-MS-RNA-250, Axygen) according to the manufacturer’s protocol. RNase A was neutralized in the first step of the RNA extraction procedure by adding Buffer R-I to the mixture. RNA degradation was evaluated by RT–qPCR using the same kits and protocols as mentioned in the viral genome quantification section.
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5

RNA Isolation and qPCR Analysis

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Lung tissue total RNA was isolated using a Multisource RNA Miniprep kit (Axygen, USA). The total RNA was reverse transcribed into cDNA using PrimeScript™ RT Master Mix (Perfect Real Time) Kit (Takara, China). qPCR was performed using an ABI Prism 7500 instrument following the SYBR-Green reagent protocol (Takara, China). Data were analyzed as fold change by the 2 -ΔΔCt method. Primers used in this study are listed below: β-actin forward: 5'-gccaaccgtgaaaagatg-3', β-actin reverse: 5'-tgccagtggtacgaccag-3'; Rras2 forward: 5'-gaccatggcttttgcttgct-3', Rras2 reverse: 5'-tagcggggacattgaacgtg-3'; Ttll12 forward: 5'gcatccagagagttcgcaga-3', Ttll12 reverse: 5'-gggtctcgggtgtaacacag-3';
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