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5 protocols using rna reverse transcription kit

1

Quantifying miR-129-5p Expression in Colon Cancer

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The expression of key miRNA (miR-129-5p) was assessed by our clinical samples. We collected three normal samples and five-colon cancer samples, and the total RNA was isolated utilizing the TRIzol reagent (Qiagen, Valencia, CA, U.S.A.). CDNA was synthesized with RNA reverse transcription kit (TIANGEN BIOTECH., China). The real-time PCR program was performed with an ABI 7300 Real-Time PCR System (Applied Biosystems Life Technologies, USA). The expression of miR-129-5p was referenced to U6, and all samples were normalized to the average of three normal samples.
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2

Investigating DcR3 Regulation in Cholangiocarcinoma

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Cell lines used in the study included human cholangiocarcinoma TFK-1, human biliary epithelial carcinoma HuCCT-1, and human cholangiocarcinoma RBE. These three kinds of cells were donated by Academy of Military Medical Sciences, China.
The following reagents were used in this study: 1640 medium and fetal bovine serum (Gibco, California, USA); RNA extraction kit, RNA reverse transcription kit, and SYBR® Green polymerase chain reaction (PCR) Real-Master Mix (Tiangen, Beijing, China); negative siRNA and DcR3-SiRNA (RIBOBIO, Guangzhou, China); Lipo2000 (Invitrogen, California, USA); CCK-8 kit (DOJINDO, Kyushu, Japan); Annexin V-FITC cell apoptosis detection kit and cell cycle detection kit (Beyotime, Shanghai, China); rabbit anti-DcR3 polyclonal antibody (CST, Boston, USA); mouse anti-β-actin monoclonal antibody, horseradish peroxidase (HRP)-labeled goat anti-mouse, and goat anti-rabbit IgG antibodies (ZSGB-BIO, Beijing, China); and bicinchoninic acid (BCA) Protein Quantification Kit and enhanced chemiluminescence (ECL) Luminescence Kit (Thermo, Waltham, USA).
Instruments used in the study were flow cytometry (Guava® easyCyte, Merck, Germany), real-time PCR (CFX96, BioRad, USA), and chemiluminescence gel imaging system (FluorChem FC3, Protein Simple, USA).
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3

Prunus salicina Lindl. Inhibits Inflammatory Response

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Prunus salicina Lindl was purchased from Yongtai County, Fuzhou City. RAW264.7 cells, a murine monocyte-macrophage cell line, were obtained from the cell bank of the Institute of Chinese Academy of Sciences (Shanghai, China). Dulbecco’s modified Eagle’s medium (DMEM), phosphate-buffered saline (PBS), Fetal bovine serum (FBS), and Hank’s balanced salt solution (HBSS) were purchased from Thermo Fisher Technology (China) Co. Ltd. (Shanghai, China). The cell counting kit-8 (CCK-8) was available from Shanghai Ya Mei Biopharmaceutical Technology Co. Ltd. (Shanghai, China); the TNF-α, IL-6, IL-1β, and IL-8 ELISA kits were purchased from Wuhan Hua Mei Biological Engineering Co. Ltd. (Wuhan, China). The SOD and MDA assay kits were obtained from the Nanjing Jian Cheng Institute of Biological Engineering (Nanjing, China). The RNA reverse transcription kit and RT-PCR quantitative kit were purchased from Tian Gen Biochemical Technology Co, Ltd. (Beijing, China).
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4

Extracting and Profiling Bacterial RNA

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Total RNA was extracted from 0.5 ml aliquot of bacterial samples collected at different growth phase using Trizol RT extraction system (Invitrogen, carlsbad, CA) following the manufacturer’s instruction. The extracted RNA was re-suspended in DEPC-treated water (Life Technologies) and the concentration and purity of RNA were determined by NanoDrop1000® spectrophotometer (NanoDrop Technologies Inc, Wilmington, DE, USA). RNA samples with 260nm/280nm ratio between 1.9 and 2.1 were prepared in equimolar aliquots for further tests. cDNA was synthesized from 200 ng of each RNA sample [18 (link)] using a Reverse Transcription Kit (Tiangen, China). Prior to cDNA synthesis, genomic DNA (gDNA) in the RNA samples were removed by incubation with a gDNA buffer at 42°C for 3 min as described in RNA Reverse Transcription Kit (Tiangen, China). Reverse transcription reactions were performed in a MasterCycler ® Gradient Thermal Cycler under the following conditions: 42°C for 15 min, 95°C for 3 min. The cDNA samples were placed immediately on ice at the end of the reactions and then stored at -20°C for later use.
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5

Quantifying PDGF and IGF Expression

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The expression profiles of PDGF and IGF were measured using a one-step SYBR PrimeScript RT-PCR kit (Takara Bio, Inc., Otsu, Japan) in an ABI Prism 7500 (Applied Biosystems; Thermo Fisher Scientific, Inc.) following the manufacturer's protocol. An RNA reverse transcription kit, dNTP, RNase inhibitor and oligo-dT (all Tiangen Biotech Co., Ltd., Beijing, China) were used for RT-qPCR. The 20 µl reaction mixture contained 4 µl cDNA, 2 µl 10X buffer, 0.4 µl dNTP (10 mol/l), 0.4 µl primer mix and 0.5 U Taq polymerase and ddH2O. The qPCR procedure was as follows: Initial denaturation at 94°C for 2 min, followed by 30 cycles of denaturation at 94°C for 30 sec, annealing at 58°C for 30 sec and elongation at 72°C for 45 sec, with a final elongation at 72°C for 10 min and short storage at 4°C. The primer sequences utilized in RT-qPCR were as follows: PDGF, forward, 5′-GATCCGCTCCTTTGATGATC-3′ and reverse, 5′-GTCTCACACTTGCATGCCAG-3′; IGF, forward 5′-AAGCCTACAAAGTCAGCTCC-3′ and reverse, 5′-CGTCTTGTTTCCTGCACTTC-3′; and β-actin, forward, 5′-TGGTGGGTATGGGTCAGAAGGACTC-3′ and reverse, 5′-CATGGCTGGGGTGTTGAAGGTCTCA-3′. All primers were synthesized by Invitrogen; Thermo Fisher Scientific, Inc. The relative expression was analyzed using the 2−ΔΔCq method (6 (link)) and the expression of all transcripts were normalized to that of the housekeeping gene β-actin.
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