Plasmids containing Pfkelch13 mutations were constructed based on the pL6cs-sgRNA plasmid (consisting of a sgRNA expression cassette and homology regions) via multiple cloning steps as previously described. Briefly, guide sequences (P5/P6) were cloned into pL6cs-sgRNA after annealing at the restriction sites AvrII and XhoI. Then two fragments of PF3D7_1343700 with desired mutations and corresponding donor DNA were amplified from genomic DNA 3D7 with the primers P7/P8, P9/P10, P11/P12, P13/P14 for Y493H, C580Y and homology regions, respectively (SI,
Xl10 competent cells
The XL10 competent cells are a high-efficiency bacterial transformation system designed for cloning and DNA manipulation. They are engineered to provide reliable and consistent transformation of a wide range of plasmid DNA.
Lab products found in correlation
2 protocols using xl10 competent cells
Genome Engineering of Plasmodium falciparum
Plasmids containing Pfkelch13 mutations were constructed based on the pL6cs-sgRNA plasmid (consisting of a sgRNA expression cassette and homology regions) via multiple cloning steps as previously described. Briefly, guide sequences (P5/P6) were cloned into pL6cs-sgRNA after annealing at the restriction sites AvrII and XhoI. Then two fragments of PF3D7_1343700 with desired mutations and corresponding donor DNA were amplified from genomic DNA 3D7 with the primers P7/P8, P9/P10, P11/P12, P13/P14 for Y493H, C580Y and homology regions, respectively (SI,
Plasmid-based DNA Amplification and Fidelity
The fidelity of IME199 DNAP was measured as previously described [15 (link)] with some modifications. In brief, IME199 DNAP or phi29 DNAP was incubated with 1 ng pUC19 (NEB, USA) at 30 °C for 8 h according to the above system. Amplification products were digested with restriction endonuclease SalI-HF (NEB, USA), heat inactivated, ligated, transformed into XL-10 competent cells (Vazyme, China), and plated onto Luria–Bertani solid plates containing ampicillin (50 μg/mL), X-Gal (0.8 mg) and IPTG (0.8 mg). Plates were incubated at 37 °C for 16 h and then the blue and white colonies were counted. In addition, the plasmids extracted from the white clones were sent to Ruibiotech (Beijing, China) for sequencing to identify the mutation site.
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