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8 protocols using 17 allylamino 17 demethoxygeldanamycin 17 aag

1

Cytotoxicity Assay for U-87 MG and M059K Cells

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U-87 MG and M059K cell lines were obtained from the American Type Culture Collection (ATCC, Rockville, MD, USA) and cultivated in Dulbecco’s modified Eagle’s medium (DMEM, Invitrogen, Taastrup, Denmark) supplemented with 10% fetal bovine serum (FBS, Biochrom AG, Berlin, Germany) at 37°C under a 5% CO2 atmosphere. Cells were treated with 17-(Allylamino)-17-demethoxygeldanamycin (17-AAG, Sigma-Aldrich, Schnelldorf, Germany), 1,3-Dichloro-6-[(E)-((4-methoxyphenyl)imino)methyl] diben- zo(b,d) furan-2,7-diol, referred to as D11 (DTP, NIH/NCI, Rockville, MD, USA), MG132 (Sigma-Aldrich), CX-4945 (Selleck Chemicals, Houston, TX, USA), 4-[(E)-(fluoren-9-ylidenehydrazinylidene)-methyl] benzoic acid (referred to as E9, DTP, NIH/NCI, USA), Glutamine (Gln, Sigma-Aldrich) and Bafilomycin A1 (Sigma-Aldrich) as indicated in the figure legends. Cells were cultured in Gln-free medium for 12 h prior incubation with 2 mM Gln for 12 h. Down-regulation of protein kinase CK2 and HSP70 was carried out by small interfering RNA (siRNA, Dharmacon, CO, USA) essentially as described in [18 (link)]. The WST-1 assay (Roche, Hvidovre, Denmark) was performed to measure cell viability determined in a microtiter plate reader according to the manufacturer’s recommendations (Perkin-Elmer, Waltham, MA, USA).
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2

Polyclonal Antibody Generation for TRABID

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To generate polyclonal antibodies to TRABID, two TRABID fragments, corresponding to the three Npl4-like zinc finger domains (3NZF; residues 1–200) and the ankyrin-repeat domain (Ank; residues 260-340) were cloned to pET32a to generate 6XHis-tagged recombinant proteins. The recombinant proteins were purified using Ni Sepharose (GE Healthcare) under denaturing conditions and used as antigens. Antiserum production and affinity purification were performed by LTK BioLaboratories (Taipei, Taiwan). Other antibodies used in this study are described in the Supplementary Data 2. Oleic acid, Doxycycline, Bafilomycin A1, Cycloheximide, 17-(allylamino)-17-demethoxygeldanamycin (17-AAG) and 17-Desmethoxy-17-N,N-dimethylaminoethylamino-geldanamycin (17-DMAG) were purchased from Sigma-Aldrich, whereas tunicamycin and thapsigargin were obtained from Cayman Chemical. MG132 was purchased from Calbiochem, and rapalog was from Clontech. Puromycin was obtained from Gibco. VPS34 inhibitor (VPS34i; SAR405) was purchased from MedChemExpress.
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3

Antibody Production and Inhibitor Validation

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Mouse monoclonal antibodies (mAbs) against RABV N or P were prepared in our laboratory46 (link). The rabbit polyclonal antibody (pAb) against GAPDH was purchased from Hangzhou Good Here Biotechnology Co. Ltd (Hangzhou, China). Rabbit anti-ß-actin and anti-Myc pAbs were obtained from Hangzhou Huaan Biotechnology Co. Ltd (Hangzhou, China). Rabbit anti-Hsp90AA1, anti-Cdc37 (phospho S13) and anti-Cdc2 mAbs were purchased from Abcam (Cambridge, MA, USA). Rabbit anti-LC3B, anti-Cdc37 and anti-IKKa mAbs were purchased from Cell Signaling Technology (Beverly, MA, USA). Mouse anti-Flag (clone M2) mAb was purchased from Sigma-Aldrich (St. Louis, MO, USA). Alexa Fluor 546-conjugated donkey anti-mouse IgG and Alexa Fluor 647-conjugated goat anti-rabbit IgG were purchased from Invitrogen Life Technologies (Carlsbad, CA, USA). The proteasome inhibitor MG-132 and the de novo protein synthesis inhibitor cycloheximide (CHX) were purchased from Beyotime Biotechnology (Shanghai, China). The Hsp90 inhibitor 17-(Allylamino)-17-demethoxygeldanamycin (17-AAG), the Hsp90 allosteric inhibitor celastrol and the autophagy inhibitor wortmannin were purchased from Sigma.
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4

Hsp90 Inhibitors Impact on miR-134 Overexpression

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To evaluate the effects of Hsp90 inhibitors on Hs578Ts(i)8 cells following direct over-expression of miR-134, 48 h post-transfection with miR-134-mimic or NC-mimic cells were seeded at 2 × 103 cells/well into a 96-well plate in 100 μl of complete medium. 24 h later, cells were exposed to their ∼IC50 of 17-(Allylamino)- 17-demethoxygeldanamycin/17-AAG (70 nM; Trade name: Tanespimycin) (Sigma-Aldrich) or PU-H71 (60 nM) (Sequoia, Pangbourne UK) drugs. Cell viability was assessed, 48 h later, using acid phosphatase [58 (link)].
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5

LNCaP Cell Culture and Treatment

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LNCaP cells were cultured in 6‐well plates at a density of 4 × 105 cells/well in hormone‐depleted medium, comprising phenol red‐free RPMI (Sigma) supplemented as above but with 5% charcoal‐stripped fetal bovine serum (Labtech International), for 72 h prior to treatment with 10 nM mibolerone (Mib) (PerkinElmer Life Sciences, Wellesley, MA), 1 μM bicalutamide (Bic) (Sigma, Chemical Co., St. Louis, MO) or 10 nM 17‐allylamino‐17‐demethoxygeldanamycin (17‐AAG) (Sigma). Cells were harvested for protein extraction and protein expression assessed by Western blotting using 10 μg of total lysate.
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6

Antioxidant Mechanisms of Araloside C

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Araloside C was obtained from the Institute of Medicinal Plant Development (Beijing, China); for details, see Supplementary material. Collagenase Type II and Fura‐2/AM were purchased from Life Technologies Corporation (Carlsbad, CA, USA). The kits for determining malondialdehyde (MDA) content, glutathione peroxidase (GSH‐Px) activity and superoxide dismutase (SOD) activity were obtained from Jiancheng Bioengineering Institute (Nanjing, China). Cell culture products were purchased from Gibco BRL (Grand Island, NY, USA). MTT [3‐(4,5‐dimethylthiazol‐2‐yl)‐2,5‐diphenyltetrazolium bromide] and 17‐allylamino‐17‐demethoxygeldanamycin (17‐AAG) were the products of Sigma Chemical Co. (St. Louis, MO, USA). The total ROS detection kit was obtained from Enzo Life Sciences (Farmingdale, NY, USA). Primary antibodies against Hsp90 and β‐actin were obtained from Abcam (Cambridge, UK). Horseradish peroxidase (HRP)‐conjugated secondary antibodies were secured from CW Biotech (Beijing, China). All chemical reagents were of at least analytical grade.
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7

Hypoxic Regulation of NP Cells

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Rat NP cells were isolated and characterized as previously reported (6 (link)). Cells were maintained in Dulbecco’s Modification of Eagle’s Medium (DMEM) and 10% FBS supplemented with antibiotics. To investigate the effects of HDAC inhibition, cells were treated with Trichostatin A (TSA; 37.5-500 nM), Tubastatin A (15 μM), MC1568 (20 μM), or pimelic diphenylamide (PD)-106 (10 μM) (Sigma Aldrich) for 4 or 8 hours. To investigate the effects of PHD or proteasomal inhibition, cells were treated with dimethyloxalylglycine (2 mM, Calbiochem) or MG132 (10 μM, Calbiochem) respectively. To investigate the effects of inhibition of protein synthesis, cells were treated with cycloheximide (50 μg/mL, Sigma Aldrich). To investigate effects of HSP90 inhibition on HIF-1α protein levels, cells were treated with 17-(Allylamino)-17-demethoxygeldanamycin (17-AAG; 500 nM, Sigma) for 8 h. Cells were cultured in a Hypoxia Work Station (Invivo2 300, Ruskinn, UK) with a mixture of 1% O2, 5% CO2 and 94% N2. To delete PHD2 through activation of CreER, 4-hydroxytamoxifen (Sigma-Aldrich) was added to the medium at a final concentration of 200 nM for 72 h.
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8

Hsp90 Mutant Analysis in Yeast

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Cells of the JA344 (Vba1-GFP) strain were transformed with the pRS416-GAL1-URA3 plasmid carrying or not the wild-type Hsp90 allele or various mutant versions, and grown at 30 C in liquid YNB medium containing 3% galactose, 0.3% glucose and 10 mM proline as the sole nitrogen source. Hsp90 expression was arrested 2 hr before imaging by adding 3% glucose. When testing Hsp90 inhibitors, cells were additionally treated with 50 mM 17-(allylamino)-17-demethoxygeldanamycin (17-AAG, Sigma-Aldrich), 10 mM SM122, 50 mM SM253 (Koay et al., 2014) or the DMSO solvent (Sigma-Aldrich) alone for 1 hr before imaging. Imaging of Vba1-GFP was performed using an epifluorescence microscope (Nikon).
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