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Cleaved caspase 3 c caspase 3

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Cleaved caspase-3 (c-caspase-3) is a protein that is produced when the enzyme caspase-3 is activated and cleaved. Caspase-3 plays a central role in the execution-phase of cell apoptosis, or programmed cell death. The cleavage of caspase-3 into its active form, c-caspase-3, is a key indicator of cells undergoing apoptosis.

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17 protocols using cleaved caspase 3 c caspase 3

1

Evaluating SNX-2112 Cytotoxicity and Signaling

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SNX-2112 was synthesized as previously described in our lab with >98.0% purity [42 (link)], dissolved in Dimethyl sulfoxide (DMSO) to obtain a 100 mM stock solution, and stored at −20°C. TRAIL was purchased from Merck Millipore (Waltham, MA, USA). N-Acetyl-cysteine (NAC) and 2′,7′-dichlorofluorescein diacetate (DCFH-DA) were purchased from the Beyotime Institute of Biotechnology (Shanghai, China). Bafilomycin A1 (BFA) was purchased from Selleck Chemicals (Shanghai, China). Dimethyl sulfoxide (DMSO) and 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) were purchased from Sigma (St. Louis, MO, USA). Antibodies for GAPDH, Bcl-2, Bcl-xL, FLIP, pro-caspase 3, cleaved-caspase 3 (c-caspase 3), cleaved-caspase 8 (c-caspase 8), cleaved-PARP (c-PARP), Akt, p-Akt (Ser473), DR4, DR5, LC3, Beclin1, Atg7, p62, p-mTOR, p-S6, p-4EBP1, p53, p-ERK, ERK, p-p38, p38, p-JNK, and JNK were purchased from Cell Signaling Technology (CST; Beverly, MA, USA).
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2

Western Blot Analysis of Apoptosis Markers

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For Western blotting analysis, cells were lysed as described previously [19 (link)]. Primary antibody, KIFC1 (H00003833-M01, Abnova, Taipei, Taiwan), Bcl-2 (sc-7382, Santa Cruz Biotechnology, Santa Cruz, CA, USA), Bax (sc-7480, Santa Cruz Biotechnology, Santa Cruz, CA, USA), cleaved PARP (c-PARP) (#5625, Cell Signaling Technology, Inc., Danvers, MA, USA), cleaved caspase-3 (c-caspase-3) (#9661, Cell Signaling Technology, Inc., Danvers, MA, USA) were used. β-Actin (Sigma-Aldrich, St. Louis, MO, USA) was used as a loading control.
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3

Ginkgolide C Modulates Oxidative Stress and Inflammation

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Ginkgolide C (GC, Purity ≥98%, PubChem CID: 161120) was purchased from Chengdu Must Bio-Technology Co., Ltd. (Chengdu, China). Zinc (II) Protoporphyrin IX (ZnPP), protease Inhibitor and ML385 were purchased from MCE (MedChemExpress, United States). Toluidine blue and 4% paraformaldehyde were purchased from Solarbio (Beijing, China). Type II Collagenase and 0.25% Trypsin-EDTA were purchased from Gibco (United States). Penicillin/streptomycin, CCK-8, DAPI, and fluorescent probe DCFH-DA were purchased from Beyotime (Shanghai, China). ProteinTech (Wuhan, China) provided the main antibodies for MMP3, IκBα, GAPDH, HO-1, and Nrf2. p65, Bcl-2, SOX9, and cleaved-caspase3 (C-caspase3) antibodies were bought from Cell Signaling Technology (Danvers, United States). Antibodies for Bax, iNOS, MMP13, Nrf2, p-IκBα, and Lamin B were bought from Affinity (Jiangsu, China). Antibodies for COX-2 and ADAMTS4 were acquired from ABclonal (Wuhan, China). OriGene (Wuxi, China) provided the β-actin antibody. Alexa 488 Goat Anti-Rabbit IgG (H + L) was purchased from APExBIO (Houston, United States).
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4

Western Blot Analysis of Signaling Proteins

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Primary Antibodies against EGFR, MET, phospho‐MET (Y1234/Y1235), HER2, phospho‐HER2 (Y1221/1222), Akt (Ak strain transforming), phospho‐Akt (S473), E‐cadherin, vimentin, cleaved caspase‐3 (c‐caspase‐3), and β‐actin were obtained from Cell Signaling Technology. Antibodies against extracellular signal–regulated MAP kinase (ERK)1/ERK2, phospho‐ERK1/ERK2 (T202/Y204), and EGFR were obtained from R&D Systems. An anti‐KRAS antibody was obtained from Santa Cruz Biotechnology. Western blot analysis was performed, as previously described.11 (link)
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5

Quantifying Apoptosis in Myocardial Infarction

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Hearts were stained with antibodies against IL-6 (goat polyclonal; Bio-techne, Minneapolis, Minnesota), CD68 (rabbit polyclonal; Abcam, Cambridge, United Kingdom), and cleaved caspase-3 (c-caspase-3) (rabbit polyclonal; Cell Signaling, Danvers, Massachusetts) with the use of species-specific secondary antibodies (Dako, Glostrup, Denmark).
c-Caspase-3 expression of nonmyocytes was measured in the area of infarction in the apical slice. Positively stained cells were counted within a grid of 100 200-μm2 squares (total area: 4 mm2) and expressed as cells/mm2. Further details are provided in the Supplemental Methods.
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6

Antibody-Based Molecular Analysis of Oxidative Stress

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Antibodies specific for LC3B, p62, mTOR, Phospho‐mTOR, p70S6K, Akt, Phospho‐Akt, Cleaved caspase 3 (C‐caspase3), Bax, Cox‐2 and TNF‐α were purchased from Cell Signalling Technologies. Antibodies against iNOS, Bcl‐2, Iba1 and Arg‐1 were purchased from Abcam. The antibody of p‐p70S6K was obtained from Santa Cruz Biotechnology, and the antibody of CD16/32 was purchased from BD Biosciences Pharmingen. AS‐IV was purchased from MedChemExpress. Lipopolysaccharide (LPS) and tert‐butyl hydroperoxide (TBHP) were purchased from Sigma‐Aldrich. 3‐methyladenine (3‐MA) was purchased from Selleckchem. 4', 6‐diamidino‐2‐phenylindole (DAPI) was obtained from Beyotime. The polymerase chain reaction (PCR) primers were synthesized by Sangon Biotech, and other reagents used in the quantitative real‐time polymerase chain reaction (qPCR) were ordered from Takara Biomedical Technology. Horseradish peroxidase‐labelled secondary antibodies were purchased from Abcam, and AlexaFluor 594 and AlexaFluor 488 AffiniPure secondary antibodies were purchased from Yeasen.
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7

Western Blot Analysis of Protein Targets

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Cells were harvested and lysed in ice-cold RIPA lysis buffer with added protease and phosphatase inhibitor (Cell Signaling Technology, Danvers, MA USA). Equal amounts of protein were resolved and separated on an SDS/PAGE gel (BioRad TrisGlycine 4–20% gel), transferred onto PVDF membranes, and subjected to immunoblot analyses. The membranes were blocked with 5% nonfat dry milk in Tris-buffered saline, pH 7.4, containing 0.05% Tween 20, and were incubated with primary and secondary antibodies according to the manufacturer’s instructions. Blotting was performed using antibodies targeting PLK1 (Abcam, Cambridge, UK; Cat. #: 17056), DNA methyltransferase 1 (DNMT1) (BD Biosciences, San Jose, CA USA; Cat. #: 612618), Bcl-xL (Cell Signaling; Cat. #: 2764), Cleaved PARP (c-PARP) (Cell Signaling; Cat. #: 9541), p53 (DO-1) (Santa Cruz, Cat. #126), p-p53 (Ser15) (Cell Signaling; Cat. #: 9284), STAT3 (BD Biosci, Cat. #: 610189), p-STAT3 (Tyr705) (abcam; Cat. #: 76315), Cleaved Caspase-7 (c-Caspase-7) (Cell Signaling; Cat. #: 9491), Cleaved Caspase-3 (c-Caspase-3) (Cell Signaling; Cat. #: 9541), and Vinculin (Cell Signaling; Cat. # 4650). Dilutions used for Cleaved Caspase-3 and Cleaved Caspase-7 were 1:250, and for other antibodies were according to the company’s recommendations.
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8

Gambogic Acid Lysinate Anticancer Protocol

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Gambogic acid (98%) was purchased from Nanjing Jingzhu Bio-technology Ltd. (Nanjing, Jiangsu, China). Lysine was purchased from Beijing Solarbio Science and Technology Co. (Beijing, China). Gambogic acid lysinate (GAL) was made in our department. 3-(4,5-Dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) and dimethyl sulfoxide (DMSO) were obtained from Sigma Aldrich (Shanghai, China). FOXO3a siRNA and the scrambled siRNA (NC siRNA) control were supplied by Santa Cruz Technology (Dallas, TX, USA). Antibodies against SIRT1, FOXO3a, p-FOXO3a (s294), p27Kip1, caspase-3 and cleaved-caspase-3 (C-caspase-3) were purchased from Cell Signaling Technology (Beverly, MA, USA). Antibody against β-actin was purchased from Santa Cruz Technology (Dallas, TX, USA). Secondary antibodies were purchased from Cell Signaling Technology.
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9

Inflammatory Signaling Pathway Assay

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Dulbecco’s modified eagle medium (DMEM), fetal bovine serum (FBS), and penicillin streptomycin (PS) were obtained from Invitrogen (Carlsbad, CA, USA). LPS was purchased from Sigma (St. Louis, MO, USA). NG-Monomethyl-L-arginine mono-acetate salt (L-NMMA) was obtained from Abcam (Cambridge, MA, USA). ELISA kits for TNF-α and IL-1β was purchased from R&D Systems (Minneapolis, MN, USA). Antibodies for Western blot were as purchased from various companies. MAPK proteins (p-38, p-p38, ERK, p-ERK, JNK, p-JNK), iNOS and cleaved caspase-3 (c-caspase-3) were purchased from Cell Signaling (Beverly, MA, USA). Additionally, COX-2, Bax and Bcl-2 were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Tubulin was purchased from Sigma-Aldrich (St. Louis, MO, USA).
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10

Protein Expression in Renal Tissue

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The proteins were obtained from renal tissues and cells, separated out by SDS‐PAGE and transferred to polyvinylidene fluoride (PVDF) membranes (Beyotime Institute of Biotechnology, China). The PVDF membranes were sealed with 5% skimmed milk, incubated with 1:1000 diluted primary antibody of β‐actin, CIDEC, ATGL, ATG5, ATG7 (Abcam), cleaved caspase3 (C‐caspase3, Cell Signaling Technology), and LC3 (Proteintech), 1:200 diluted cleaved PARP (C‐PARP; Boster Biological Technology), EGR1 (Santa Cruz Biotechnology, Dallas, TX, USA) primary antibody overnight, then incubated in 1:5000 diluted horseradish peroxidase labeled second antibody. Immobilon Western HRP substrate (WBKLS0500; Millipore Corporation, Danvers, MA, USA) was used to take pictures and Image J software (National Institutes of Health, Bethesda, MD, USA) was used to analyze the relative strength of the bands.
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