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Myiq5 icycler

Manufactured by Bio-Rad

The MyiQ5 iCycler is a real-time PCR detection system designed for advanced gene expression analysis and quantification. It features a high-performance optical system, precise temperature control, and intuitive software for accurate and reliable results.

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8 protocols using myiq5 icycler

1

Quantitative Real-Time PCR for Gene Expression

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Using the manufacturer’s protocol, total mRNA was isolated from colon, kidney, or the indicated cell type using the Omega Total RNA Kit. According to the manufacturer’s protocol, cDNA was generated using the RNA to cDNA Ecodry Premix Kit (Clontech). cDNA was used as a template for quantitative real-time PCR using SYBR Green Master Mix (Roche), and gene-specific primers (37 (link)). PCR analysis was performed using a MyiQ5 ICycler (BioRad). Gene expression was normalized relative to Gapdh.
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2

Quantitative Real-Time PCR Analysis

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Total mRNA was isolated from the colon or an indicated cell type using the Omega Total RNA Kit according to the manufacturer’s protocol. cDNA was generated using the RNA to cDNA Ecodry Premix Kit (Clontech) according to the manufacturer’s protocol. cDNA was used as a template for quantitative real-time PCR using SYBR Green Master Mix (Roche) and gene-specific primers (30 (link), 31 (link)). PCR analysis was performed using a MyiQ5 ICycler (BioRad). Gene expression was normalized relative to Gapdh.
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3

Quantification of CD11c+ DC Gene Expression

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Total mRNA was isolated from purified splenic, lymph node, and tumor CD11c+ DCs using the Omega Total RNA Kit according to the manufacturer’s protocol. cDNA was generated using the RNA to cDNA Ecodry Premix Kit (Clontech) according to the manufacturer’s protocol. cDNA was used as a template for quantitative real-time PCR using SYBR Green Master Mix (Roche), and gene-specific primers (19 (link),26 ). PCR analysis was performed using a MyiQ5 ICycler (BioRad). Gene expression was calculated relative to Gapdh.
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4

Quantitative RT-PCR for Gene Expression Analysis

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Total mRNA was isolated from colon or indicated cell type using the Omega Total RNA Kit according to the manufacturer’s protocol. cDNA was generated using the RNA to cDNA Ecodry Premix Kit (Clontech) according to the manufacturer’s protocol. cDNA was used as a template for quantitative real-time PCR using SYBR Green Master Mix (Roche), and gene-specific primers(27 (link), 28 ). PCR analysis was performed using a MyiQ5 ICycler (BioRad). Gene expression was calculated relative to Gapdh.
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5

Quantitative Real-Time PCR for Gene Expression

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Total mRNA was isolated from colon or cells using the Omega Total RNA Kit according to the manufacturer’s protocol. cDNA was then generated using an RNA to cDNA Ecodry Premix Kit (Clontech) according to the manufacturer’s protocol. Subsequently, quantitative real-time PCR was done using SYBR Green Master Mix (Roche) with gene-specific primers (19 (link)) and a MyiQ5 ICycler (BioRad), and with gene expression normalized relative to Gapdh.
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6

Cardiac Tissue mRNA Extraction and Quantification

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Total mRNA was isolated from cardiac tissues using RNA‐binding columns (RNaqueous‐4‐PCR; Ambion, Austin, TX), according to the manufacturer's protocols. RNA was immediately reverse transcribed into cDNA using a kit employing random primers (iScript; Bio‐Rad, Hercules, CA), according to the manufacturer's directions. Real‐time reaction mixtures contained 11 μL of H2O, 12 μL of IQ SYBR Green Supermix (Bio‐Rad), 1 μL of primers, and 1 μL of cDNA template (25 μL total). Sense and antisense primers were chosen from the RTPrimerDB public primer database for mouse. Reactions were aliquoted into 96‐well plates, plates were sealed, centrifuged at 500g for 60 seconds, and then samples were amplified for 40 cycles of 10 seconds at 95°C, 30 seconds at 55°C, and 10 seconds at 72°C. Real‐time PCR was performed in a MyIQ5 iCycler (Bio‐Rad). All samples were measured in triplicates and normalized to GAPDH controls run on the same plate for each mouse cDNA sample that was tested. Gene expression levels were calculated by using (2Ct (gene)/2Ct (GAPDH))×1000 to standardize to GAPDH and expressed as relative transcript numbers. Positive gene expression was additionally visualized by conventional PCR and ethidium bromide stained agarose gel electrophoresis using appropriate primer sets.
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7

Quantitative Real-Time PCR Analysis of Gene Expression

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For PCR analysis with reverse transcription, RNA was isolated using the RNeasy Mini kit from Qiagen (Cat. No./ID: 74104, Valencia). mRNA from each sample (4 µg) was reversely transcribed using the Invitrogen SuperScript III first-strand synthesis system kit (Cat. No. 18080-051, Invitrogen). Reverse transcription products (cDNAs) were subjected to PCR for 20 cycles. The PCR products were stained with ethidium bromide and analysed on 2% agarose gels. For real-time PCR analysis, cDNAs were used as a template for quantitative real-time PCR using SYBR Green Master Mix (Cat. No. 04913922001, Roche) and gene-specific primers. PCR analysis was performed using a MyiQ5 ICycler (BioRad) according to the manufacturer’s protocol. Gene expression was calculated relative to β-actin. The primers used in PCR analysis are listed as follows:

Dab2 p96-forward: 5′-AAGCAGGACTTGGAAAGTTCTGT-3′, reverse: 5′-AA GCAGGACTTGGAAAGTTCTGT-3′;

Dab2 p67-forward: 5′-ACATGTCTACACCTCCTGACCTA-3′, reverse: 5′-CA TTGCCTTTGAAGAGATCCAGAA-3′;

CTSB-forward: 5′-GGCCCAGTGGAGGGTGCCTT-3′, reverse: 5′-TGCGTGG GATTCCAGCCACAA-3′;

β-actin-forward: 5′-TCATGAAGTGTGACGTTGACATCCGT-3′, reverse: 5′-CCTAGAAGCATTTGCGGTGCACGATG-3′.

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8

Quantitative RT-PCR Analysis of Gene Expression

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Total mRNA was isolated from colon or indicated cell type using the Omega Total RNA Kit according to the manufacturer’s protocol. cDNA was generated using the RNA to cDNA Ecodry Premix Kit (Clontech) according to the manufacturer’s protocol. cDNA was used as a template for quantitative real-time PCR using SYBR Green Master Mix (Roche), and gene-specific primers (18 (link)). PCR analysis was performed using a MyiQ5 ICycler (BioRad). Gene expression was normalized relative to Gapdh.
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