The largest database of trusted experimental protocols

14 protocols using sorvall legend micro 21r

1

Isolation and Purification of Cell-Derived Extracellular Vesicles

Check if the same lab product or an alternative is used in the 5 most similar protocols
The preparation of CCMs was conducted as the literature38 (link). 4T1 cells were cultured in the RPMI-1640 media containing 10% fetal bovine serum (37 °C, 5% CO2). When the cells were 80%–90% adherent, 0.25% trypsin was used for digestion followed by centrifugation using a centrifuge (Sorvall Legend Micro 21R, Thermo Fisher Scientific Co., Waltham, USA) at 1000 rpm for 5 min. The cells (5.3 × 108) were washed 2–3 times with the sterile PBS pre-cooled at 4 °C, and the supernatant was withdrawn after centrifugation. The membrane protein extraction reagent A containing 1 mmol/L protease inhibitors was added into the precipitated cells followed by suspending in an ice bath for lysis for 15 min. The suspended cells were disrupted with an ultrasonic cell breaker (HUP-100, Heng Ao Technology Development Co., Ltd., Tianjin, China) and the conditions: 300 W, ultrasound for 5 s, stop for 5 s, repeating 20 times. The suspension was centrifuged at 4 °C and 1000×g for 10 min. The supernatant was collected followed by centrifugation at 4 °C and 21,000×g for 50 min. The precipitated CCMs were collected, suspended in 3 mL of PBS, and stored at −80 °C.
+ Open protocol
+ Expand
2

Skeletal Muscle Myofilament Extraction

Check if the same lab product or an alternative is used in the 5 most similar protocols
The extraction of myofilament proteins from skeletal muscle was adapted from our previous studies.15 (link)–16 ,24 (link) Briefly, 5–10 mg of rat skeletal muscle tissue was homogenized in 50 μL of HEPES extraction buffer (25 mM HEPES pH 7.5, 2.5 mM EDTA, 50 mM NaF, 1 mM Na3VO4, 1 mM PMSF in isopropanol) using a Teflon pestle (1.5 mL microcentrifuge tube, flat tip, Thomas Scientific, Swedesboro, NJ, USA). The homogenate was centrifuged for 20 min at 16,000 × g, 4 °C (Sorvall Legend Micro 21R, Thermo Fisher Scientific, Am Kalkberg, Germany) and the supernatant was discarded. The pellet was then resuspended and further homogenized in 10 volumes (μl/mg. tissue) of trifluoroacetic acid (TFA) extraction buffer (1% TFA, 2 mM TCEP). The homogenate was centrifuged for 20 min at 16,000 × g, 4 °C. The resulting supernatant was centrifuged for an additional 20 min at 16,000 × g, 4 °C to completely remove the pellet prior to LC-MS analysis. Bradford protein assay was performed using bovine serum albumin for the linear curve to determine the total protein concentration of the extracts for protein normalization prior to LC-MS.
+ Open protocol
+ Expand
3

Blood Collection and Hematocrit Measurement in Mice

Check if the same lab product or an alternative is used in the 5 most similar protocols
Blood samples (~200 μl) were collected in experiment 1 on
test days 1 (9:00–10:30 h) and 7 (13:00–14:30 h) and in experiment
2 on test day 8 (12:30–14:30 h) (Table
1
). Mice were anesthetized with isoflurane and blood was collected
from the retro-orbital sinus into heparinized microhematocrit capillary tubes
(Chauke et al., 2011 (link); Harris et al., 2011 (link); Andrew et al., 2016 (link)). Blood was centrifuged at 4°C and 1300
RPM (~1,900 g) for 12 min (Sorvall Legend Micro 21R; Thermo Scientific),
and hematocrit was recorded.
+ Open protocol
+ Expand
4

Rhesus Macaque Muscle Protein Extraction

Check if the same lab product or an alternative is used in the 5 most similar protocols
Approximately 5 mg of rhesus macaque skeletal muscle tissue was homogenized in 50 μL of HEPES extraction buffer (25 mM HEPES pH 7.4, 2.5 mM EDTA, 50 mM NaF, 2 mM Na3VO4, 1 mM PMSF in isopropanol) using a Teflon pestle (1.5 mL microcentrifuge tube, flat tip, Thomas Scientific, Swedesboro, NJ, USA) to extract cytosolic proteins. The homogenate was centrifuged for 20 min at 16,100 rcf, 4 °C (Sorvall Legend Micro 21R, Thermo Fisher Scientific, Am Kalkbarg, Germany) and the supernatant was discarded. The pellet left was then resuspended and further homogenized in 50 μL of TFA extraction solution (1% TFA, 10 mM TCEP) to extract sarcomeric proteins. The homogenate was centrifuged for 20 min at 16,100 rcf, 4 °C. The resulting supernatant was saved and then centrifuged for an additional 20 min at 16,100 rcf, 4 °C to completely remove pellet prior to liquid chromatography (LC)/MS analysis.
+ Open protocol
+ Expand
5

Protein Extraction and Western Blot Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Proteins in samples were obtained by lysing with radioimmunoprecipitation assay (RIPA; Beyotime) buffer at 4 °C for half an hour, and the supernatant fraction was kept after centrifugation (21,100 × g, 4 °C) for 25 min (Sorvall Legend Micro 21R, Thermo Scientific, Germany). A BCA kit (Sigma) was used to quantify the concentration of protein. Then, proteins (20 μg) were separated by SDS-PAGE (Beyotime) and transferred to a polyvinylidene fluoride membrane (Bio-Rad Laboratories). Next, the membrane was sealed with blocking buffer and incubated in primary antibody solution, including antibodies against SIRT3 (1:1000), Runx2 (1:500), OCN (1:500), osterix (1:500), ALP (1:1000), pSer9-GSK-3β (1:500), total GSK-3β (1:2000), axin-2 (1:1000), β-catenin (1:5000), caspase-1 (1:200), NLRP3 (1:1000), GSDMD (1:1000), IL-1β (1:1000), and IL-18 (1:1000, all obtained from Abcam), overnight at 4 °C. After washing 3 times with Western blot washing solution (Beyotime), the corresponding secondary antibody at a dilution of 1:5000 was added at room temperature for 60 min. Protein bands were captured by enhanced chemiluminescence (ECL; GE Healthcare), and protein quantification was performed using Image Lab 3.0.
+ Open protocol
+ Expand
6

Detailed Analytical Techniques in Research

Check if the same lab product or an alternative is used in the 5 most similar protocols
Component weighing was performed on a laboratory scale (Ohaus, Parsippany, NJ, USA). Sample centrifugation was performed on a Sorvall Legend Micro 21R microcentrifuge (Thermo Fisher Scientific, Waltham, MA, USA). Absorbance measurements were performed on a Varioskan LUX multimode plate reader (Thermo Fisher Scientific, Waltham, MA, USA). Absorbance data were analyzed using the Skanit-RE software v5.0 (Thermo Fisher Scientific, Waltham, MA, USA). Immunohistology sample preparation was performed using a Ventana Discovery ULTRA system (Roche Diagnostics, Rotkreuz, Switzerland). Immunohistochemistry imaging was performed on an inverted IX81 fluorescence microscope (Olympus, Tokyo, Japan). Macroscopic imaging was performed on an iPhone 12 (Apple, Cupertino, CA, USA).
+ Open protocol
+ Expand
7

Lipid Vesicle Formation and Substrate Deposition

Check if the same lab product or an alternative is used in the 5 most similar protocols
Mixtures of DOPC/DOPE-pAA-Cys5 = 95 : 5 mol% or DOPC/DOPE-pAA-Cys5/Texas-Red-DHPE = 94 : 5 : 1 mol% were suspended in isopropanol. Lipid dry films were prepared following the gentle evaporation of isopropanol by a flow of N2 gas in a glass vial and storage in a vacuum chamber at room temperature overnight. The films were resuspended at a final concentration of 1 mg mL−1 in 100 mM NaCl buffered with 10 mM Tris–HCl (pH = 7.4). The products were then sonicated for 30 min at ∼1 W using a tip sonicator (XL2000-600, Misonix, Newtown, CT, USA) and centrifuged (Sorvall Legend Micro 21R, Thermo Scientific, Waltham, MA, USA) to obtain a suspension of small unilamellar vesicles (SUV). The SUV suspensions were then incubated onto the ODTMS-functionalized solid substrates overnight (Fig. 1). After thorough pipetting to remove excessive SUVs, the solution was replaced with fresh 10 mM Tris–HCl buffer solutions (pH = 7.4) containing designated metal ions (e.g., 100 mM NaCl, 100 mM NaCl + 1 mM CaCl2, or 100 mM NaCl + 1 mM CdCl2) by exchanging the solutions at least 10 times of the initial volume using a pipette. The lateral average distance between the lipopolymer molecules, 〈d〉 = 3.6 nm, was calculated from eqn (1), using the cross-sectional area of the single phospholipid membrane Alipid ≈ 0.6 nm2 and the molar fraction of lipopolymers χlipo = 0.05.
+ Open protocol
+ Expand
8

Quantification of Total Flavonoids in Basil

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total flavonoid content was determined by aluminum chloride colorimetric assay (Zhishen et al., 1999 (link)). Total flavonoid content was extracted from 300 mg of frozen ground basil and 1.5 ml of methanol/H2O/acetone (60:30:10 v/v/v) in an ultrasonic bath (Branson 2800, Richmond, VA, United States) for 15 min. Samples were centrifuged at 15,000 RCF (Sorvall Legend Micro 21R, Thermo Fisher Scientific, Waltham, MA, United States) at 4°C for 10 min, and the supernatant was collected. Catechin was used as a quantifying standard. In a 3-ml cuvette, 50 μL of the extracted sample was mixed with 1.95 ml water and 75 μL of 5% NaNO2. After 6 min 150 μL of 10% AlCl3 was added and after another 5 min, 500 μL of 1 M NaOH was added. The absorbance was measured at a wavelength of λ = 250 nm in a spectrophotometer (Genesys 50, Thermo Fisher Scientific, Waltham, MA, United States) against a blank. Data was expressed on the base of dry weight as mg/g DW.
+ Open protocol
+ Expand
9

Quantification of Hydrogen Peroxide in Basil Leaves

Check if the same lab product or an alternative is used in the 5 most similar protocols
Hydrogen peroxide (H2O2) was determined according to Junglee et al. (2014) (link) with some modifications. H2O2 was extracted from 0.1 g of frozen ground basil leaves with 0.4 ml of 0.1% TCA, 0.4 ml of potassium phosphate buffer (pH 7.6), and 0.8 ml of potassium iodide. After incubation for 10 min at 4°C, the samples were centrifuged at 15,000 RCF (Sorvall Legend Micro 21R, Thermo Fisher Scientific, Waltham, MA, United States) at 4°C for 10 min, and the supernatant was collected. Samples were measured in UV-cuvettes at a wavelength of λ = 350 nm in a spectrophotometer (Genesys 50, Thermo Fisher Scientific, Waltham, MA, United States) against the blank. For quantification, a calibration curve was prepared with H2O2 solutions with concentrations from 10 to 400 μmol/L. For each sample, three technical replicates were prepared. Data were expressed on the base of dry weight as mg/g DW.
+ Open protocol
+ Expand
10

Salivary Tannin Absorbance Profiling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Saliva samples were first thawed to 4°C and centrifuged at 20,000 g at 4°C for 20 minutes (Sorvall Legend Micro 21R, Thermo Fisher Scientific, Waltham, MA). After centrifugation, the supernatant (either 1mL or 1.5mL, depending on available volume) was mixed with an equal volume of 0.1% w/w tannic acid solution (Sigma-Aldrich, St. Louis, MO) in a spectrophotometer cuvette. These solutions were left at room temperature for 15 minutes, then light absorbance was read in 50nm wavelength increments between 450–700nm using an Epoch 2 Microplate Spectrophotometer (BioTek Instruments, Winooski, VT). Distribution of absorbance values was broadest at 450nm, and the general order of subjects was maintained across the other wavelengths; thus, measurements at 450nm were used for analysis.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!