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5 protocols using mycoplasma detection set

1

Characterization of Cervical Cancer Cell Lines

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ME‐180 and CaSki cells, both heterozygous PIK3CA mutant (E545K) cervical cancer cell lines, were obtained from the RIKEN BioResource Center and cultured in RPMI‐1640 medium (Sigma). The SiHa cell line (wild‐type PIK3CA) was purchased from the American Type Culture Collection (ATCC) and cultured in modified Eagle’s medium (MEM) (Sigma). All cell cultures were supplemented with 10% heat‐inactivated FBS and 1% antibiotics (streptomycin and penicillin). The cell lines were maintained at 37°C in 5% CO₂ in air. All cells were authenticated by the suppliers and used within 10 passages after thawing. The lines were tested for Mycoplasma contamination was tested using a Mycoplasma Detection Set (TaKaRa).
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2

Doxycycline-Inducible HERC2 Knockdown and HERC2 Catalytic Mutation in Cell Lines

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HeLa, HCT116, and HEK293T cells were obtained from ATCC with authentication and stored in liquid nitrogen or cultured according to the supplier’s instructions for less than 20 passages. All cells were routinely monitored for mycoplasma with a Mycoplasma Detection Set (TaKaRa). HeLa cells stably expressing HERC2-specific shRNA (5′-GAAGGTGGCTGTTCACTCA-3′) in a doxycycline (Dox)-inducible manner (HeLa-shHERC2) and HCT116 cells lacking the HERC2 catalytic ubiquitin-binding site (HCT116-HERC2ΔE3/ΔE3) due to CRISPR/Cas9-mediated insertion of the stop codon at E4758 were previously described20 (link). HeLa-shHERC2 cells were treated with 1 µg/ml Dox for 48 h and subjected to individual experiments.
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Cell Culture Maintenance for Neuroblastoma

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Human neuroblastoma SH-SY5Y, Kelly, and SK-N-AS cells were maintained in DMEM, RPMI1640, and MEM/F12, respectively. All cell lines were supplemented with 10% FBS (Thermo Fisher Scientific, Waltham, MA, USA) as well as penicillin/streptomycin (Thermo Fisher Scientific) and cultured in a humidified atmosphere at 37°C with 5% CO2. SH-SY5Y cells were purchased from ATCC, while Kelly and SK-N-AS cells were obtained from the European Collection of Authenticated Cell Cultures. Murine Ba/F3 cell line was obtained from RIKEN BioResource Center and maintained in RPMI 1640 medium supplemented with 10% FBS, penicillin/streptomycin and 10 ng/ml of recombinant mouse interleukin-3 (IL-3, Fujifilm-Wako Chemicals). Mycoplasma contamination was tested for using the Mycoplasma Detection Set (Takara Bio, Kusatsu, Japan).
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Cell Culture and Transfection Protocols

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HEK293 and MCF7 cells were cultured in Dulbecco’s Modified Eagle Medium (DMEM; Sigma) supplemented with 10% fetal bovine serum (FBS; Invitrogen, Carlsbad, CA, USA). Human neuroblastoma SH-SY5Y and SK-N-BE(2) cells were maintained in RPMI 1640 (Sigma) supplemented with 10% FBS. HEK293 cells were obtained from the JCRB Cell Bank and MCF7 and SH-SY5Y cells were from ATCC, while SK-N-BE(2) cells were purchased from the European Collection of Authenticated Cell Cultures. Mycoplasma contamination was tested by Mycoplasma Detection Set (Takara), and short tandem repeat analysis was performed for cell authentication (Promega). Transient transfection with C-terminal hemagglutinin (HA) or myc-tagged human NLRR1 plasmids was performed using Fugene HD (Roche) or Lipofectamine2000 (Invitrogen) according to the manufacturer’s instructions. Seventy to eighty percent confluent monolayers of transfected cells were treated with growth factors for the indicated times after 16 h serum starvation, and cell lysates were subjected to western blot analyses. Cell proliferation was determined using a Cell Counting Kit-8 (Dojindo, Japan).
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5

Culturing Renal Cell Carcinoma Lines

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The human RCC cell lines, 786-O, Caki-1, 769-P, A498, ACHN and the immortalized proximal tubule epithelial cell line from normal adult human kidney (HK-2) were purchased from American Type Culture Collection (ATCC, Manassas, VA, USA). Mycoplasma detection was performed using a Mycoplasma Detection Set (Takara, Shiga, Japan) for all the cells. All the RCC cell lines were routinely cultured in Dulbecco’s modified Eagle’s medium (DMEM, Invitrogen, Carlsbad, CA, USA) supplemented with 10% fetal bovine serum (FBS), 100 U/ml Penicillin, and 100 µg/ml streptomycin in the humidified atmosphere with 5% CO2 at 37°C.
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