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8 protocols using merck silica gel

1

Synthesis and Characterization of Novel Compounds

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All the chemicals were purchased from Sigma-Aldrich, and all the solvents for the use were of laboratory grade. The materials for in vitro evaluation were obtained from Sigma-Aldrich Ltd. The reactions were monitored by thin layer chromatography (TLC) on precoated silica gel 60 F254 (Merck, Darmstadt, Germany), and spots were visualized with UV light. Merck silica gel (80–120 mesh; Merck, Darmstadt, Germany) was used for column chromatography. All the synthesized compounds were purified by recrystallization and column chromatography. Melting points were determined via an open capillary method and were uncorrected. IR spectra were recorded on a Perkin-Elmer FT-IR 240-C Spectrophotometer using KBr optics (Perkin-Elmer, Waltham, MA, USA). Next, 1H-NMR spectra were recorded on Gemini Varian (Varian, Palo Alto, CA, USA) 200 MHz, Bruker (Bruker Bioscience, Billerica, MA, USA) AV 300 MHz, and Unity (Varian) 400 MHz spectrometer in DMSO-d6 or CDCl3 using TMS as an internal standard. Electron impact (EI) and chemical ionization mass spectra were recorded on a VG 7070 H instrument (Micromass, St Leonards-0n Sea, UK) at 70 eV.
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2

Isolation and Characterization of Phytochemical Compound NN-01

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The fine stem bark powder (1 kg) was subjected to maceration with dichloromethane (1:5 w/v) for 3 days with periodic shaking. The maceration extract was filtered through Whatman (No. 1) filter paper and concentrated under reduced pressure at 45 °C. Silica gel column chromatography (60 × 1000 mm; Merck silica gel, 60: 0.063–0.200 mm) was used to isolate the compound from the DCM extract. The column was eluted with hexane: ethyl acetate gradient and the ratio 8:2 yielded 35 fractions. The fractions were grouped according to the thin layer chromatography (silica gel 60 aluminium sheets, F 254—Merck, Whitehouse Station, New Jersey, USA) profiles, into seven combined fractions (Cfrs). The spots were fixed on the TLC plates with a 20% H2SO4 in methanol mixture and viewed under UV light (254 nm). The combined fractions were then dried under a fume-hood overnight; Cfrs 2–4 produced a white amorphous powder (NN-01). NN-01 was recrystallized from methanol to give white needles (mpt. 95–98 °C); [α]D = − 11(0.1M in CHCl3); HREI-MS: MF = C17H24O5, [M+Na]+ ion at m/z 331.1619 (calcd: 331.1521).
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3

Arylation of Pyridine Derivatives

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All solvents were distilled from Na/benzophenone or calcium hydride prior to use. All chemicals were purchased and used as received. The 1H and 13C {1H} NMR spectra were recorded on 400 and 500 MHz spectrometers in CDCl3 with residual undeuterated solvent (CDCl3, 7.26/77.0) as an internal standard. Chemical shifts (δ) are given in ppm, and J values are given in Hz. All chemical shifts were reported in ppm using tetramethylsilane as a reference. Chemical shifts (δ) downfield from the reference standard were assigned positive values. Open column chromatography and thin layer chromatography (TLC) were performed on silica gel (Merck silica gel 100–200 mesh). Potassium tert-butoxide was purchased from Sigma-Aldrich. All benzoxazoles (4a–d) were synthesized following the reported literature.44 All aryldiazonium tetrafluoroborate salts were synthesized following the reported literature.29 The modified methodology for arylation of pyridine is described in the ESI (pages S5 and S6).
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4

Characterization of Organic Compounds

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All chemicals were purchased from commercial sources (Sigma Aldrich (St. Louis, MO, USA), Acros Organics (Geel, Belgium)) and used without further purification. 1H and 13C NMR spectra were recorded on a Bruker AV-300 spectrometer (Bruker Corporation, Billerica, MA, USA) (300.13 MHz and 75.46 MHz, respectively), Bruker AV-400 (Bruker Corporation, Billerica, MA, USA) (400.13 MHz and 100.61 MHz), Bruker DRX-500 (Bruker Corporation, Billerica, MA, USA) (500.13 MHz and 125.76 MHz). Mass spectra (70 eV) were recorded on a DFS Thermo Scientific high-resolution mass spectrometer. A PolAAr 3005 polarimeter (Optical Activity, Ramsey, UK) was used to measure optical rotations [α]D. Melting points were measured on a Mettler Toledo FP900 Thermosystem apparatus (Mettler Toledo, Cornellà de Llobregat, Spain). Merck silica gel (Merck, Darmstadt, Germany, 63−200 μm) (63−200 μm) was used for column chromatography. Spectral and analytical measurements were carried out at the Multi-Access Chemical Service Center of Siberian Branch of Russian Academy of Sciences (SB RAS).
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5

Spectroscopic Analysis of Usnic Acid Derivatives

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The analytical and spectral studies were conducted at the Chemical Service Center for the collective use of Siberian Branch of the Russian Academy of Science. The 1H and 13C-NMR spectra for solutions of the compounds in CDCl3 were recorded on a Bruker AV-400 spectrometer (Bruker Corporation, Hanau, Germany; operating frequencies 400.13 MHz for 1H and 100.61 for 13C). The residual signals of the solvent were used as references (δH 7.27, δC 77.1 for CDCl3). Merck silica gel (63–200 μ) was used for the column chromatography. Thin-layer chromatography was performed on TLC Silica gel 60F254 (Merck KGaA, Darmstadt, Germany). The target compounds reported in this manuscript had a purity of at least 95% (HPLC). All chemicals were used as described unless otherwise noted. Reagent-grade solvents were redistilled prior to use. Synthetic starting materials, reagents, and solvents were purchased from Sigma-Aldrich (St. Louis, MO, USA), Acros Organics (Geel, Belgium), and AlfaAesar (Heysham, UK).
(R)-(+)-Usnic acid (+)-9 was purchased from Zhejiang Yixin Pharmaceutical Co., Ltd. (Lanxi, China). Compounds 3,4 were obtained using a known procedure. The spectra of the substances coincided with that in the literature [31 (link),32 (link)].
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6

Spectroscopic Characterization of Compounds

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Melting points were uncorrected and were measured on a Mettler Toledo instrument. IR spectra were recorded on an Alpha FT-IR Spectrometer from Bruker, while 1D and 2D NMR spectra were obtained on a Bruker DRX 500 (500 MHz for 1H and 125 MHz for 13C spectra) spectrometer (Bruker, Rheinstetten, Germany) with chemical shifts reported in δ (ppm) using TMS (δH) as an internal standard. The HR-ESI-MS were obtained on LTQ-FT instrument (Thermo Scientific, Waltham, MA). UPLC–MS were measured by a Shimadzu UPLC–MS system using a L column 2 ODS (I.D. 2.1 × 100 mm, Chemical Evaluation and Research Institute, Tokyo, Japan), at a flow rate of 0.2 mL/min, a detection wavelength of 350 and 300 nm, and FMW (HCOOH/MeCN/H2O = 1:12:87) as eluent, ESI+ 4.5 kV, ESI 3.5 kV, 250 °C. Optical rotations were measured on a Perkin-Elmer 341 polarimeter. Silica gel 60 (230–400 mesh E. Merck, Darmstadt, Germany) was employed for column chromatography (CC), the solvent mixing systems for elution were mainly CH2Cl2–MeOH with increasing polarity. Analytical thin layer chromatography (TLC) was carried out on Merck silica gel (Merck, Darmstadt, Germany) 60 PF254 plates (0.25 mm layer thickness).
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7

Spectroscopic Characterization of Organic Compounds

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All spectral data were procured using the following instruments: Fourier-transform Infrared (FTIR) spectra were obtained using a PerkinElmer 2000 FTIR Spectrum spectrometer (PerkinElmer, Waltham, MA, USA). Nuclear magnetic resonance (NMR) spectra were recorded on a Bruker AVN 500 MHz spectrometer (Bruker Bioscience, Billerica, MA, USA). Data were analysed with the Top Spin 3.6.1 software package (Bruker Bioscience, Billerica, MA, USA). Chemical shifts were internally calibrated using the residual CHCl3 solvent peak in CDCl3 (1H, δ 7.26), the CDCl3 solvent signal (13C, δ 77.0) or the tetramethylsilane (TMS) signal (1H or 13C, δ 0.00 ppm). Tetrahydrofuran (THF, QRëC, Grade AR) was freshly distilled from sodium benzophenone ketyl. Dimethylformamide (DMF, QRëC, Grade AR) was dried over 4 Å molecular sieves prior to use. All other commercially available chemicals and materials were used without further purification. Column chromatography was performed using Merck silica gel (0.040–0.063 mm) (Merck & Co., Kenilworth, NJ, USA). Thin Layer Chromatography (TLC) was completed with silica gel-coated aluminium sheets (silica gel 60 F254).
The procedure of intermediates and final compounds synthesis and their NMR; ATR-IR and HRMS spectra of the compounds are presented in Supplementary Materials.
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8

Microwave-Assisted Synthesis and Characterization

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All solvents and reagents were purchased from Sigma-Aldrich (Deisenhofen, Germany) and used without further purification. 4-Hydroxyacetophenone was purchased from Acros (Thermo Fisher Scientific Geel–Belgium). The monitoring of reaction was done by the utilization of pre-coated silica gel plates (60 F254) and thin layer chromatography (TLC). The normal phase silica gel (Merck, 70–230 mesh) was used to perform column chromatography purification, while the Merck silica gel (230–400 mesh) was utilized to perform the vacuum liquid chromatography.
A controllable single-mode microwave reactor, CEM Discover Microwave™ designed for synthetic utilization, was used. The reactor consists of power and pressure controls in addition to a magnetic stirrer. The temperature is controlled by an IR sensor. Melting points were measured using Sanyo MPD350 apparatus (Gallenkamp, Osaka, Japan) with digital display, and they were not corrected. A Perkin Elmer ATR spectrophotometer (Waltham, MA, USA) was used to record the infrared (IR) spectra. A Bruker Advance 400 MHz spectrometer (Fällanden, Switzerland) was used to record 1H NMR and 13C NMR spectra. NMR samples were separately measured in DMSO, CDCl3, and MeOD at room temperature. Mass spectra were recorded on Finnigan MAT95XL (ThermoFisher Scientific, Bremen, Germany) using (EI), at 70 eV.
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