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8 protocols using alamar blue

1

Evaluating Anticancer Potential of Astaxanthin

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Acrylamide, bovine serum albumin (BSA), bromophenol blue, 7,12-dimethylbenz[a]anthracene (DMBA), hydroxyurea, 2-mercaptoethanol, sodium dodecyl sulphate (SDS) N,N,N′,N′ - tetramethylene diamine (TEMED) and Trizol were purchased from Sigma Chemical Company, St. Louis, MO, USA. Astaxanthin was procured from Bio-Real, Sweden. DMEM-F12 medium, antibiotic solution consisting of penicillin and streptomycin and Alamar blue were from HiMedia Labs, Mumbai, India. Fetal bovine serum of South American origin was from GIBCO, Invitrogen, NY, USA. Power SYBR Green PCR master mix was obtained from Applied Biosystems, California, USA. Antibodies for IL-6, GAPDH, Cyclin D1, PCNA, p21, MMP-2, MMP-9, TIMP-2, RECK, VEGF, VEGFR2, HIF1α, were purchased from Santa Cruz Biotechnology, USA. pJAK-2tyr1007/1008, JAK-2, pSTAT-3tyr705, STAT-3 and histone (H2B) antibodies and BrdU, STAT-3tyr705, total Cyclin D1 and pVEGFR2tyr1175 ELISA kits were from Cell Signaling Technology, USA. CD-34 antibody was purchased from Novocastra, Germany. Matrigel was from BD Biosciences, USA. All other reagents used were of analytical grade.
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2

Nanoparticle Formulation for Anticancer Drug Delivery

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PLGA (50:50 7 kDa–17 kDa, acid terminated), polyethylenimine (25 kDa, branched), epirubicin and paclitaxel were purchased from Sigma Aldrich (Darmstadt, Germany). Acetone was purchased from Sisco Research Laboratories Pvt. Ltd. (Mumbai, India). PF68 surfactant, Alamar blue, PBS buffer and sodium bicarbonate were procured from HiMedia (Mumbai, India). Dulbecco’s modified Eagle’s medium (DMEM), fetal bovine serum (FBS) were obtained from Gibco Life Technologies (Carlsbad, CA, USA). In-house distilled water was used during the studies.
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3

SPAB Cytotoxicity and Anti-Inflammatory Effect

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BEAS2B cells were seeded at 1×105 cell/mL in a 96 well plate and treated with various doses of SPAB (1 µg/mL - 100 µg/mL) for 24 hr upon reaching 70% confluence. Cells were washed and incubated with 10 µL of Alamar blue (0.15 mg/mL) (Hi Media, India) in serum free medium for 1 hr and fluorescence at Ex. 530 nm/Em. 590 nm was measured and expressed as percentage cell viability. BEAS2B cells were pre-treated for 24 hr with various concentrations of SPAB (1–30 µg/mL) followed by co-treatment with SPAB + 500 ng/mL lipopolysaccharide (LPS) for another 24 hr. Cell culture supernatants were used for measuring cytokine secretion.
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4

Anticancer Compound Evaluation Protocol

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Malic acid, Diosgenin, Pluronic F68, 1, 12-Dodecanedioic acid (DDA), Pluronic 127 were purchased from Sigma Aldrich. Acetone was obtained from Sisco Research Laboratories Pvt. Ltd. (Mumbai, India). Perchloric acid was purchased from Central Drug House (CDH) (Mumbai, India). For animal cell culture studies, Phosphate buffered saline, Alamar Blue and DAPI or 4′,6-diamidino-2-phenylindole, sodium bicarbonate were procured from HiMedia (Mumbai, India). Dulbecco’s modified Eagle’s medium (DMEM), Fetal Bovine Serum (FBS), Trypsin-EDTA (0.25%) were purchased from Gibco Life Technologies (Carlsbad, CA, USA). MilliQ water was used in the preparation of solutions during the study. A549, human adenocarcinoma cell lines were purchased from NCCS, Pune, India.
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5

Comprehensive Phytochemical Characterization of Madhugrit

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Madhugrit (batch #1MDT-210081) was sourced from Divya Pharmacy, India. The standards for HPLC analysis namely gallic acid, magnoflorine, piperine, rutin, ellagic acid, coumarin, cinnamic acid, and palmatine were obtained from Sigma-Aldrich, USA; protocatechuic acid, corilagin from Natural remedies, India, and methyl gallate from TCI chemicals, India. Reagents namely RPMI 1640 (no glucose), DMEM (low glucose), DPBS, antibiotic-antimycotic solution, starch, Malondialdehyde (MDA), Trichloroacetic acid (TCA), LPS, and 2′,7′-Dichlorofluorescin diacetate (H2DCFDA) were procured from Sigma-Aldrich, USA. Heat-inactivated FBS, TPVG, Bovine serum albumin (BSA), Nile red, and Alamar blue were obtained from HiMedia, India. Horse serum was bought from Gibco, USA. Chemicals, 2-thiobarbituric acid (TBA), D-glucose, Metformin, and dexamethasone were obtained from TCI chemicals, India. Phorbol 12-myristate 13-acetate (PMA) was purchased from Alfa Aesar, UK. Mitomycin C was obtained from Roche, Germany. Pierce BCA protein assay kit and sodium azide were obtained from Thermo Fisher Scientific, USA. Human TNF-α and IL-6 ELISA kits were obtained from BD Biosciences, USA. QUANTI-Blue reagent was purchased from InvivoGen, USA.
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6

Alamar Blue Assay for Cell Viability

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Cell viability was measured by Alamar blue assay [27] (link). Briefly, Alamar blue (Resazurin sodium salt from Himedia) was dissolved in phosphate buffered saline pH 7.4 to make a stock of 5 mg/mL and a final working concentration of 0.1 mg/mL in cell culture medium. Resazurin is a redox indicator, which measures the reducing environment of the cell by reducing to a highly fluorescent resorufin. Astaxanthin at different concentrations (5, 10, 20, 50, 100, 200 and 400 µM) was added to the cells and after 24 h, Alamar blue dye was added and the plates were incubated at 37°C for 4 h. The color change was monitored colorimetrically at 595 nm and 570 nm to evaluate oxidized versus reduced forms respectively of the reagent by using multi-mode plate reader.
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7

Microdilution Assay for Mycobacterial MIC Determination

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We followed the protocol of Collins and Franzblau (1997 (link)) with slight modifications. Briefly, freshly grown mycobacterial cultures (~ 1 OD600 in 10 ml rich medium) were washed once with fresh sterile 10 ml rich medium and subcultured to 0.05 OD600 in 10 ml fresh rich medium. When OD600 reached 0.4–0.6, the cells were washed once with the fresh rich medium at 4,000 rpm and RT for 15 min and then used for estimation of MIC. Approximately 3.75 to 4 × 104 colony-forming units (CFUs) were used for the assays. Two-fold dilutions of different drug concentrations (INH:0.02 to 23.3 μM; RIF:0.75–768 nM; EMB:0.15–156.63 μM) were added in triplicates to different wells with appropriate controls (positive-culture only; negative-medium only, and drug only). The final volume in each well was made up to 200 μl with the rich medium and gently mixed 3–4 times with a 200-μl pipette. After 5 days of incubation at 37°C (without shaking), 22 μl of 10× alamarBlue (HiMedia) was added, and the contents were mixed again before incubation (without shaking) for additional 2 days. Color change from blue (metabolically inactive/dead) to pink (metabolically active/growing) was photographed and recorded. To prevent loss of medium due to evaporation in experimental wells, all the peripheral wells were filled with 200 μl of sterile rich medium.
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8

Antimycobacterial Screening of GaNP

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M.smegmatis mc2155, initially obtained from ATCC, was maintained in our laboratory as glycerol stocks. M.tb H37Rv (gift from Prof R. K. Bhatnagar, Jawaharlal Nehru University, New Delhi, India), was cultured in BSL-3 facility. Growth media (Middlebrook 7H9) and OADC supplement were obtained from BD, USA. glycerol, Tween 80, acetic acid, acarbose and cyclosporine-A were procured from Sigma-Aldrich, India. GaNP (purity > 99.9%) was obtained from Nanoshel, India. All other reagents such as Alamar Blue, Crystal Violet, Isoniazid, and Ethambutol were of analytical grade and obtained from Himedia, India.
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