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7 protocols using sc 20095

1

Chondrogenic Differentiation Analysis

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A semiquantitative analysis of differentiation was performed on cell-seeded hydrogels via Western blotting as described previously using the following antibodies that were diluted in 3% BSA in TBST buffer: aggrecan (1 : 1000, sc-16492, Santa Cruz Biotechnology, USA), Col II (1 : 5000, ab34712, Abcam, USA), and Sox-9 (1 : 1000, sc-20095, Santa Cruz Biotechnology, USA) antibodies and goat anti-mouse horseradish peroxidase-conjugated secondary antibody (1 : 2000, CW0102, Cwbiotech). And the protein level was quantified and normalized to GAPDH bands by densitometry in Quantity One software (version 4.6.2, Bio-Rad, n = 3).
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2

Quantitative Western Blot Analysis of Lsd1 and Sox9

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Total protein was isolated from cultured ACs and quantified by Bradford method (Bio-Rad) in RIPA buffer (Cell Signaling). 10 µg of total protein was applied to SDS-PAGE and then transferred to a polyvinylident difluoride membrane (Millipore). After being blocked in 5% dry milk at 4°C overnight, membrane was incubated with specific antibodies against mouse Lsd1 (C69G12, Cell Signaling) or mouse Sox9 (sc-20095, Santa Cruz) at room temperature for 2 hours. Horseradish peroxidase (HRP)-conjugated anti-rabbit IgG (sc-2004, Santa Cruz) was used as the secondary antibody. Monoclonal anti-β-Actin (A1978, Sigma) was used as a loading control. The protein bands were detected in Pierce 1-Step Ultra TMB Blotting Solution (Prod#37574, Thermo Scientific) and photographed with a computerized gel documentation system (FOTO/Analyst Express, FOTODYNE).
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3

Immunohistochemistry on Paraffin-Embedded Skin

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Immunohistochemistry on paraffin sections was performed as previously described [9 (link)]. Briefly, skin samples were fixed in 4% buffered paraformaldehyde and embedded in paraffin. For immunohistochemistry, antigen retrieval was performed in citrate buffer (pH 6.0) for 10 minutes at 110°C in HistoPro (Rapid Microwave Histoprocessor, Milestone, USA). The following primary antibodies were used: anti-Sox10 (goat, 1:200, Santa Cruz Biotechnology, Santa Cruz, CA), anti-Sox10 (mouse, 1:200, R&D), anti-Sox9 (rabbit, 1:100, sc-20095, Santa Cruz Biotechnology, Santa Cruz, CA), anti-Sox9 (rabbit, 1:100, ab36748, Abcam), anti-Sox9 (M00006662, Abnova), anti-Sox9 (AB5535, Millipore), anti-Sox9 (GTX 109661, GenTex), anti-MITF (mouse, clone 6D3, 1:500) was a kind gift from Heinz Arnheiter (NIH, USA). Images were captured with a Leica DMI 6000B Microscope and using LAS AF (Leica Application Suite Advanced Fluorescence) software. For whole mount X-Gal staining, skin samples were fixed with 4% buffered paraformaldehyde, washed with PBS and subjected to X-Gal staining solution overnight at 37°C. After several washing steps, tissue was paraffin embedded and sectioned. 5 μm thick sections were further counterstained with eosin solution and mounted.
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4

Protein Expression in Cartilage Tissue

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After culture, the discs were rinsed with PBS and the innermost NP tissue was isolated under a dissecting microscope. Then, Western blotting assay for SOX-9, aggrecan, and collagen II was performed. Briefly, after the total protein was extracted using RIPA lysis buffer (Beyotime, China), equal protein sample in each group was subjected to SDS/PAGE system and transferred to the PVDF membrane. Then, incubation of the primary antibodies (GAPDH: Abcam, ab8245; collagen II: Abcam, ab34712; aggrecan: Santa Cruz, sc-16492; SOX9: Santa Cruz, sc-20095; all were diluted 1:1000) was performed at 4°C overnight, and incubation of the corresponding HRP-conjugated secondary antibodies (goat anti-mouse IgG, goat anti-rabbit IgG, and mouse anti-goat IgG, ZSGB-BIO, China, diluted 1:1000) was performed at room temperature for 2 h. Thereafter, protein bands on the PVDF membrane were visualized using ECL Plus reagent (Thermo, U.S.A.). Then, protein expression normalized to GAPDH was calculated according to the gray value that was measured using the ImageJ software (National Institutes of Health, U.S.A.).
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5

Histochemical Analysis of Murine Skeletal Development

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For hematoxylin and eosin (H&E) staining and immunohistochemistry (IHC) of tissue sections, P21 mice were fixed in 4% paraformaldehyde for 24 h. Paraffinization of a dissected tibia was conducted (TP1020, Leica) after decalcification with 10% EDTA (pH 7.4). Detailed procedures were performed as described previously (Kim B. S. et al., 2021 (link)). IHC using antibodies against collagen Type X (COL10; 234,196, Millipore‐Sigma), proliferating cell nuclear antigen (PCNA; sc‐56, Santa Cruz Biotechnology), SOX9 (sc‐20095, Santa Cruz Biotechnology), MMP9 (sc6840, Santa Cruz Biotechnology), MMP13 (ab39012, Abcam), and nuclear factor‐κB (NF‐κB; Santa Cruz Biotechnology) was conducted after antigen retrieval. All stained tissue images were acquired with a DP72 digital microimaging camera (Olympus) under a BX51 microscope (Olympus).
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6

Immunohistochemical Analysis of Gonadal Markers

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The gonad-mesonephros complexes before and after culture were fixed in 4%
paraformaldehyde in 0.1 M phosphate buffer (pH 7.4) for 2 hr at 4°C. The specimens were
dehydrated with an ethanol series followed by xylene and then embedded in paraffin. Then,
5-µm-thick sections were cut by a sliding microtome and placed on slide
glasses. Immunohistochemical staining was carried out as described previously [42 (link)]. For the primary antibody, we used an anti Amh
(anti-Müllerian hormone) goat polyclonal antibody (1:24,000; sc-6886; Santa Cruz
Biotechnology, Santa Cruz, CA, USA), anti-Sox9 rabbit polyclonal antibody (1:1,000;
sc-20095; Santa Cruz Biotechnology) or anti-Foxl2 (forkhead box L2) goat polyclonal
antibody (1:25,000; ab5096; Abcam, Cambridge, UK). For the secondary antibody, we used a
Dako EnVision+ system-HRP (horseradish peroxidase)-labeled polymer (Dako Japan,
Tokyo, Japan) or peroxidase-conjugated donkey anti-goat IgG (ab97112; Abcam).
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7

Comprehensive Immunohistochemical Analysis of Neoplastic Tissues

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Histopathological analysis was performed by using hematoxylin and eosin (H&E) staining. Immunohistochemical analysis of HER2 was performed to evaluate cell proliferation and downstream intracellular signaling in neoplastic tissue. Primary antibodies used in this study were anti-HER2 (1:200, CST#4290, Cell Signaling Technology, Danvers, MA, USA), anti-MUC1 (1:100, ab15481, Abcam, Cambridge, MA, USA), anti-MUC2 (1:200, sc-15334, Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-MUC5 (1:100, sc-21701, Santa Cruz Biotechnology), anti-Ki67 (1:100, ab16667, Abcam), anti-CyclinD1 (1:25, CST#2978, Cell Signaling Technology), anti-phospho-p44/p42 (1:100, CST#4376, Cell Signaling Technology), anti-SOX-9 (1:100, sc-20095, Santa Cruz Biotechnology), anti-TP53 (1:200, CST#2524, Cell Signaling Technology), and anti-CK19 (1:50, sc-376126, Santa Cruz Biotechnology).
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