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Alexa fluor 647 affinipure donkey anti rabbit igg h l

Manufactured by Jackson ImmunoResearch
Sourced in France, United States

Alexa Fluor® 647 AffiniPure Donkey Anti-Rabbit IgG (H + L) is a secondary antibody used in immunoassays and other applications. It is designed to detect and bind to rabbit primary antibodies. The antibody is conjugated with the Alexa Fluor® 647 fluorescent dye, which can be detected using appropriate instrumentation.

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7 protocols using alexa fluor 647 affinipure donkey anti rabbit igg h l

1

Immunofluorescence Analysis of Tissue Markers

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The paraffin-embedded tissue specimens were sectioned into 5 μm thick sections. After deparaffinization, rehydration through graded ethanol, and antigen retrieval with pH 6.0 citrate buffer in a pressure cooker for 15 mins, sections were blocked with 5% bovine serum albumin (BSA) for 1 hour at room temperature and then incubated with diluted primary antibodies in 1% BSA at 4 °C overnight. Anti-smooth muscle 22α (ab14106, ABCAM, 1:50) and anti-smooth muscle heavy chain (ab53219, ABCAM, 1:50) were used for detecting smooth muscle contractile proteins, anti-von Willebrand factor (anti-vWF (A0082, DAKO, 1:200) and anti-CD31 (NB100–2284, Novus Biologicals, 1:100) for endothelial cell markers, anti-CD68 (ab31630, ABCAM, 1:100) for macrophage cell marker and anti- IL-1 beta (NB600–633, Novus Biologicals, 1:100) for pro-inflammatory cytokine. Alexa Fluor® 647 AffiniPure Donkey Anti-Mouse IgG (H+L) (715–605-151, Jackson Immuno Research, 1:500), Alexa Fluor® 647 AffiniPure Donkey Anti-Rabbit IgG (H+L) (711–605-152, Jackson Immuno Research, 1:500), Alexa Fluor® 594 AffiniPure Donkey Anti-Mouse IgG (H+L) (715–585-150, Jackson Immuno Research, 1:500) were used as secondary antibodies. The sections were counterstained with DAPI before being observed under an immunofluorescence microscope (DP80 microscope digital camera, Olympus).
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2

STORM Imaging of Neuronal Surface Transporters

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For STORM of NKCC1 or KCC2 on the neuronal surface, cells were transfected at DIV14 with NKCC1a-HA-Δflag-ΔmVenus, NKCC1b-HA-Δflag-ΔmVenus or KCC2-3Flag-ECL2 constructs. They were then fixed at DIV21 for 4 min at room temperature (RT) in paraformaldehyde (PFA; 4% w/v; Sigma) and sucrose (20% w/v; Sigma) in 1× PBS. The cells were then washed in PBS and incubated for 30 min at RT in goat serum (GS; 3% v/v; Invitrogen) in PBS to block nonspecific staining. Neurons were then incubated for 120 min at RT with HA antibody (rabbit, 1:250, Cell signaling Technology, cat #C29F4) or Flag antibody (mouse, 1:400; Sigma, cat #F3165) in PBS-GS blocking solution. After washing, neurons were incubated with Alexa Fluor® 647 AffiniPure Donkey Anti-Rabbit IgG (H + L) (2 µg/mL, Jackson ImmunoResearch, cat #711-605-152) or Alexa Fluor® 647 AffiniPure Donkey Anti-Mouse IgG (H + L) (2 µg/mL, Jackson ImmunoResearch, cat #711-605-151) in PBS-GS solution.
For the STORM/PALM imaging of NKCC1 in relation with inhibitory synapses, cells were transfected at DIV14 with NKCC1a-HA-Δflag-ΔmVenus and dendra2-gephyrin construct. They were then fixed at DIV21 in 4% PFA for 15 min, washed in PBS 1x and stained for KCC2 or NKCC1 (as above).
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3

Fluorescent Membrane Protein Localization Assay

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NKCC1-HA-Flag-mVenus membrane expression and clustering were assessed with staining performed after a 4 min fixation at room temperature (RT) in paraformaldehyde (PFA; 4% w/v; Sigma) and sucrose (20% w/v; Sigma) solution in PBS (1×). Cells were washed three times in PBS and incubated for 30 min at RT in a blocking solution composed of goat serum (GS; 3% v/v; Invitrogen) prepared in PBS. Neurons were then incubated for 60–180 min at RT with HA primary antibody (rabbit, 1:250, cell signaling technology, cat #C29F4) in PBS–GS blocking solution. After washing, neurons were incubated with Cy™3 AffiniPure Donkey Anti-Rabbit IgG (H + L) (1.9 µg/mL; Jackson ImmunoResearch, Saint-Cyr-L’École, France, cat #111-165-003) for standard epifluorescence assays, or Alexa Fluor® 647 AffiniPure Donkey Anti-Rabbit IgG (H + L) (2 µg/mL, Jackson ImmunoResearch, cat #711-605-152) for super-resolution experiments, in PBS-GS solution. The coverslips were then washed and mounted on slides with mowiol 844 (48 mg/mL; Sigma). Sets of neurons compared for quantification were labeled and imaged simultaneously.
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4

Comprehensive Antibody Panel for Septin Proteins

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Antibodies used were as follows: Anti-Septin2 (Cat# 07–1813; Millipore for Western blot; and Cat# HPA018481; Sigma-Aldrich for IF); additional anti-Septin2 antibody used for immunofluorescence was a generous gift from Dr. Elias Spiliotis (Drexel University, Philadelphia, PA; Spiliotis et al., 2008 (link); Fig. 1 A), anti-Septin9 (Cat# sc-293291; Santa Cruz), anti-Septin6 (Cat# sc-514806; Santa Cruz for Western blot), anti-SEPT7 (Cat# ab175229; Abcam for Western blot), anti-Cortactin (Cat# 05–180; Millipore), anti-MMP14 (MT1-MMP; Cat# MAB3328; Millipore), anti-Tks5 (fish, G-7; Cat# sc-376211; Santa Cruz), anti-FAK (Cat# 610087; BD PharMingen), anti-GAPDH (Cat# AM4300; Ambion), anti-mCherry (Cat# 5993–100; BioVision), FITC-conjugated AffiniPure Donkey anti-Rabbit IgG (H+L; Cat# 711–095-152; Jackson Immunoresearch), Rhodamine Red-X AffiniPure Donkey Anti-Rabbit IgG (H+L; Cat# 711–295-152; Jackson Immunoresearch), Alexa Fluor 647 AffiniPure Donkey Anti-Rabbit IgG (H+L; Cat# 711–605-152; Jackson Immunoresearch), Goat Anti-Mouse IgG1 Secondary Antibody (Atto 488; Cat# LS-C209452; LSBio), Purified Rat Anti-Mouse TER-119 rat anti-mouse erythrocyte (Cat# 550565; BD PharMingen), and IHCPlus PECAM-1/CD31 Antibody Monoclonal (Cat# LS-B3446; LSBio).
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5

FLAG-tagged Protein Detection in HEK293T Cells

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HEK293T cells were seeded (6,000,000 cells in 20 mL DMEM 10% FCS without Pen/Strep) in a 10 cm Petri dish and left overnight to attach. Cells were transfected using a mixture of 96 μg PEI MAX 40000 (Polysciences Inc.) and 24 μg DNA in 2 mL opti-MEM. After 24 hours, cells were harvested by scraping, washed two times with PBS and lysates were prepared and treated with 30 μM 20 as described above. Click chemistry, reducing SDS-PAGE and visualization were performed as described above. Proteins were transferred to a PVDF membrane using a Trans-Blot Turbo transfer system (Bio-Rad). Membrane was blocked with 5% milk in Tris-Buffered Saline with 0.1 % Tween 20 (TBST) for one hour. Rabbit polyclonal antibody against DYKDDDDK (FLAG) (CST, #2368S, 1/1,000 in 5% milk in TBST) and α-tubulin (CST, #2144S, 1/1,000 in 5% milk in TBST) were added and incubated overnight at 4 °C. Membrane was washed three times for five minutes with TBST and incubated with Alexa Fluor 647-AffiniPure Donkey Anti-Rabbit IgG (H+L) (Jackson ImmunoResearch Inc., 711-605-152, 1/500 in 5 % milk in TBST) for one hour at r.t. Membrane was washed four times for five minutes with TBST and visualized with a Sapphire Biomolecular Imager (Azure Biosystems).
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6

Visualizing STAT3 Isoform Localization

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KYSE150 STAT3-KO cells were seeded onto coverslips for 24 h. Cells were transfected with Flag-STAT3α, STAT3β-HA, or a combination of both. After transfection, cells were fixed with 4% paraformaldehyde for 10–15 min, and then washed three times with PBS. Then, 0.1% Triton X-100 permeabilization reagents was added for 10 min. Cells were washed and blocked in 5% normal donkey serum for 1 h. Then, cells were incubated with anti-Flag M2 mouse monoclonal antibody (F3165, Sigma) and anti-HA (sc-7392, Santa cruz) overnight, and cells were stained with Alexa Fluor 488-conjugated donkey anti-mouse IgG (H + L) (1:500, 715-545-150, Jackson) and Alexa Fluor® 647 AffiniPure donkey anti-rabbit IgG (H + L) (1:500, 711-605-152, Jackson) secondary antibodies for 60 min at RT, then washed three times with PBS and counterstained with DAPI (#D9564-10MG, Sigma) at RT for 10 min to visualize the nuclei. Images were obtained and processed by laser-scanning confocal microscopy (LSM800, Carl Zeiss).
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7

Dual Immunofluorescence Staining Protocol

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Samples were incubated for 1 h with the following antibodies diluted in 5% BSA in PBS: rabbit polyclonal anti-53BP1 (ab36823, Abcam, Cambridge, UK), and mouse monoclonal IgG2b DynLL1/Pin1 (MAB2294, R&D systems, Minneapolis, MN, USA). Cells were washed 3 times in PBS and incubated for 45 min at room temperature with the following secondary antibodies: Alexa Fluor® 647 AffiniPure Donkey Anti-Rabbit IgG (H + L) (711-605-152, Jackson-immunoresearch, West Grove, PA, USA) and Cy™3 AffiniPure Donkey Anti-Mouse IgG (H + L) (715-165-150, Jackson-immunoresearch, West Grove, PA, USA). Cells were then briefly re-fixed in 4% paraformaldehyde (wt/vol) and incubated overnight with the following primary antibodies: Alexa488-conjugated mouse anti phosphoH2A.X (ser39) (γH2A.X) (613406, Biolegend, San Diego, CA, USA) and rat monoclonal anti-Tubulin (MAB1864, Chemicon, Merck Life Science, Milan, Italy). Cells were then rinsed 3 times in PBS and incubated for 1 h with donkey anti-Rat IgG (H + L) biotin (a18749, ThermoFisher Scientific, Waltham, MA, USA) and for 45 min at room temperature with streptavidin Atto425 conjugated (S000-51, Rockland Immunochemicals, Pottstown, PA, USA). After washings, DNA was counterstained with Chromomycin, and finally, cells were briefly re-fixed in 4% paraformaldehyde (wt/v). Before image acquisition, PBS was replaced by STORM Imaging Buffer.
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