The largest database of trusted experimental protocols

8 protocols using coolsnap hq camera

1

Quantifying Smooth Muscle Cell Proliferation

Check if the same lab product or an alternative is used in the 5 most similar protocols
SMC proliferation was determined with the Click‐iT® EdU Cell Proliferation assay (Invitrogen) according to the manufacturer's protocol. SMCs were serum starved for 18 hours and then seeded at 50% confluence on fibronectin‐coated coverslips in SMC medium supplemented with 5% serum. EdU reagent was added 3 hours after seeding, and the cells were cultured for an additional 24 hours. Samples were gently rinsed with 1% bovine serum albumin in sterile PBS 3 times and fixed with the Click‐iT® fixative solution (15 minutes, room temperature). The samples were gently rinsed twice in 1% bovine serum albumin in sterile PBS, and permeabilized with 1x Click‐iT® sponin‐based permeabilization and wash reagent. EdU‐positive cells were labeled with Cy5 dye by using a click reaction. After excess reagent was rinsed, nuclei were labeled with DAPI. The coverslips were mounted, sealed, and imaged by epifluorescence microscopy on a Nikon 80i microscope equipped with a CoolSnap HQ camera. Four images were captured per coverslip at ×4 magnification. EdU‐positive and DAPI‐positive nuclei were quantified (Nikon NIS Elements software).
+ Open protocol
+ Expand
2

Multimodal Adipogenic and Osteogenic Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were fixed with 4% paraformaldehyde (Sigma-Aldrich, St. Louis, MO), permeabilized with 0.1% Triton X-100 in PBS, and blocked using 1% BSA. The actin cytoskeleton, nucleus, and LGN were stained with phalloidin-rhodamine (Sigma-Aldrich, St. Louis, MO), DAPI (Sigma-Aldrich, St. Louis, MO), and anti-GPSM2 (Sigma-Aldrich, St. Louis, MO), respectively. Fluorescent images were captured using a Nikon eclipse 80i microscope with CoolSnap HQ camera. Fate specification was determined with dual staining of alkaline phosphatase and Oil Red O for osteogenesis and adipogenesis, respectively, and imaged using a Nikon E600 microscope with a color camera. Cells with lipid vacuoles stained red and were considered adipocytes. Cells that stained deep purple were determined to be osteoblasts.
+ Open protocol
+ Expand
3

Quantifying Phospho-H3 and EdU in FFPE Skin Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
FFPE tissue blocks containing human skin or melanoma tissue were sectioned, deparaffinized, and rehydrated with serial passage through changes in xylene, graded ethanols, and deionized water. All slides were subjected to heat-induced epitope retrieval in target retrieval solution (pH 6.1) (cat S1699; Dako). Slides were then incubated with antiphospho H3 – Alexa488 (#9701; Cell Signaling) for 60 minutes at room temperature in a dark room. EDU staining was done using Click-iT EDU imaging kit following the manufacturer’s instructions (Life Technologies, Cat# C10337). Slides were washed twice in TBS-T, mounted using Vectashield Mounting Medium with DAPI (Vector Laboratories, Cat# H-1500), and analyzed using Leica DMRE Fluorescent microscope and Nikon Coolsnap HQ camera. Phospho H3-positive cells were manually counted from two skin sections. Each section had ~3 mm2 of epidermis surface. Statistical analyses were conducted using a one-way analysis of variance (ANOVA) test with GraphPad Prism software.
+ Open protocol
+ Expand
4

Immunohistochemical Analysis of Formalin-Fixed Tissues

Check if the same lab product or an alternative is used in the 5 most similar protocols
Formalin-fixed tissues were embedded in paraffin and cut in 5 μm sections. Sections were evaluated by H&E and immunohistochemical analysis using antibodies specific for vimentin (Cell Signaling, 5741), endomucin (Santa Cruz, 65495), E-cadherin (Cell Signaling, 3195), phospho-histone H3 (Millipore, 06-570), cleaved caspase-3 (Cell Signaling, 9664), equilibrative nucleoside transporter 1 (ENT1, Abcam, AB135756), F4/80 (Novus, NBP2-12506), Arginase 1 (Arg1, Santa Cruz, sc-18351). Negative controls included omission of primary antibody. Immunofluorescence evaluation was conducted as described (19 (link)). Fluorescent images were captured with a Photometrics CoolSNAP HQ camera using NIS Elements AR 2.3 Software (Nikon). Color images were obtained with a Nikon Eclipse E600 microscope using a Niko Digital Dx1200me camera and ACT1 software (Universal Imaging Corporation). Pictures were analyzed using NIS Elements (Nikon).
+ Open protocol
+ Expand
5

High-resolution Imaging of Murine Skin

Check if the same lab product or an alternative is used in the 5 most similar protocols
Most samples were analyzed using a Nikon inverted TE2000-E microscope equipped with phase contrast and epifluorescence, a digital CoolSNAP HQ camera, a Prior ProScanII motorized stage, and a Nikon C1 confocal system, using EZC1-3.90 and NIS-Elements -AR acquisition software (Nikon, Melville, NY, USA). Images were acquired with Plan Fluor 4×/0.13, Plan Fluor 10×/0.30, Plan Fluor ELWD 20×/0.45, Plan Apo 40×/1.0 oil, and Plan Apo 100×/1.4 oil objectives, and analyzed with NIS elements (Nikon). Contrast and/or brightness were adjusted for some images to assist in visualization. To image murine skin at high resolution, a Zeiss LSM 880 confocal microscope system with AiryScan detector and a FAST Airyscan module mounted on an AxioObserver (Carl Zeiss, Inc, Peabody, MA, USA)was used. The LSM 880 confocal detection system had 34 spectral-detection channels consisting of a cooled 32 element GaAsP detector array with two flanking photomultiplier tubes (PMTs). Wavelength separation was achieved using high-efficiency grating; maximum spectral resolution was 3 nm over a 286 nm range (410 to 696 nm). Objective lenses: 10×|0.45 NA (air), 20×/0.8 NA DIC, 25×|0.8 multi-immersion DIC, 40×|1.4 NA W DIC, 63×|1.4 NA DIC oil, C-Apochromat 40×/1.2 W/korr FCS, Plan-Apochromat 63×/1.4 NA oil DIC ELYRA. Six single-photon-excitation laser lines were available: 405, 458, 488, 514, 561 and 633 nm.
+ Open protocol
+ Expand
6

Indirect Immunofluorescence Microscopy Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were cultured, synchronized, and/or infected for indirect immunofluorescence on a μ-Slide VI 0.4 (80606; Ibidi). At various time points, cells were washed twice with cold PBS and fixed with 1% paraformaldehyde (PFA) either for 30 min at room temperature or overnight at 4°C. Immunofluorescence (IF) was assessed as previously described (10 (link)) except to follow manufacturer’s recommendations (AN03 and MV18; Ibidi) for volumes and handling. Images were collected with a Nikon Ti-Eclipse inverted wide-field microscope, taken with a CoolSnap HQ camera, and recorded with Nikon NIS Elements software (v 4.00.03). At least 500 nuclei were counted per condition. Images were processed and background subtracted using NIH FIJI/ImageJ software.
+ Open protocol
+ Expand
7

Immunofluorescence Imaging of Virus-infected Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
CV-1 cells were grown in 12-well plate with coverslips. For knockdown studies, cells were reverse transfected with the desired siRNA using Lipofectamine RNAiMAX (Thermo Fisher Scientific) at the time of cell seeding. SV40-infected or mock-infected cells washed with PBS followed by fixation with 4% formaldehyde at room temperature were then permeabilized using 0.2% Triton X-100, and blocked by 5% milk with 0.2% Tween. Primary antibodies were incubated for 1 h at room temperature or overnight at 4°C, followed by incubation of fluorescent-conjugated secondary antibodies for 2 h at room temperature. Coverslips were mounted with ProLong Diamond Antifade Mountant with DAPI (Thermo Fisher Scientific) for widefield epifluorescence and confocal microscopy. Images were taken using inverted epifluorescence microscope (Nikon Eclipse TE2000-E) equipped with 100X oil immersion objective (N.A. 1.4), Sola lumencore light engine and Photometrics CoolSnap HQ camera, Nikon N-SIM E in confocal mode with CFI SR HP Apochromat TIRF 60XC Oil immersion objective (NA 1.49), LU-NV series laser unit, and ORCA-Flash 4.0 sCMOS camera (Hamamatsu Photonics K.K.). NIS-Elements AR software was used to take images. FIJI distribution of ImageJ (Schindelin et al., 2012 (link); Schneider et al., 2012 (link)) was used for image processing, analyses, and assembly.
+ Open protocol
+ Expand
8

Immunofluorescence of SETD2 in COS7 cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
COS7 (ATCC, CRL-1651) cells transiently expressing tSETD2-FLAG constructs (Lipofectamine 2000 and OptiMEM) were fixed with 4% formaldehyde in PBS, treated with 50 mM NH4Cl in PBS to quench unreacted formaldehyde and permeabilized with 0.2% Triton X-100 in PBS. Subsequently, cells were blocked in blocking solution (0.2% fish skin gelatin in PBS). Primary antibodies tubulin (DSHB, AB_528499, 1:2000) and FLAG (Abcam, ab205606, 1:2000), and secondary antibodies were applied in blocking solution at room temperature for 1 h each, washing in between with blocking solution. Nuclei were stained with 10.9 μM 4′,6-diamidino-2phenylindole (DAPI) and cover glasses were mounted in ProlongGold (Life Technologies). Cells were incubated 3x for 5 min in blocking solution to remove unbound antibodies. Images were collected on an inverted epifluorescence microscope (Nikon TE2000E) equipped with a 60x, 1.40 numerical aperture oil-immersion objective and a 1.5x tube lens on a Photometrics CoolSnapHQ camera driven by NIS-Elements (Nikon) software.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!