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6 protocols using texas red

1

Characterization of Decellularized Testicular Scaffolds

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Fixation of the scaffolds was performed by incubation
in 10% formalin solution in PBS at 25°C for 24-48 hours.
The fixed scaffolds were then dehydrated by incubation
in graded alcohol (each alcohol for 20 minutes). After
embedding them in paraffin, they were cut into 5 µm-thick
sections for histological evaluation. Hstaining was performed on paraffin sections for evaluation
of detergent efficacy to remove the cells and debris from
the testes. Preservation of glycosaminoglycans (GAGs)
and collagen in decellularised scaffolds were assessed by
alcian blue (Sigma, USA) and Masson’s trichrome staining
(Sigma, USA), respectively. Alcian blue was diluted 1:100
in hydrochloric acid (0.1 M). On these samples nuclear
fast red (Sigma, USA) was used for counter-staining
(12 (link), 13 (link)). Also, preservation of ECM proteins, including
fibronectin, collagen IV, and laminin in decellularised
scaffolds was evaluated by immunohistochemistry
(IHC). Initially, the sections were transferred to a 60°C
oven for de-waxing, then further cleared in xylene. Later,
they were rehydrated by alcohol gradient and washing
in water. Then they were incubated in citrate (10 mM
pH=6.0) for 20 min for antigen retrieval. Then the samples
were permeabilized by triton X-100 for 40 minutes and
incubated with anti-fibronectin (mouse monoclonal IgG,
Elabscience Biotechnology Inc., USA), anti-collagen IV
(mouse monoclonal IgG, Elabscience Biotechnology Inc.,
USA), and anti-laminin (rabbit polyclonal IgG, Abcam,
USA). The secondary antibody was Alexa Fluor 488 (goat
anti-mouse IgG, Invitrogen, USA) and Texas Red (Goat
anti-rabbit IgG, Abcam, USA). Photomicrographs were
taken with an Olympus microscope (Olympus, Center
Valley, PA, USA).
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2

Carnosic Acid Mitigates Inflammation

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Carnosic acid (Sigma-Aldrich International, Darmstadt, Germany). Indomethacin (Endol 25 mg; 25 cap., DEVA Holding A.S., Istanbul, Turkey); Esomeprazole (Nexium 40 mg; 28 tablets, AstraZeneca Pharmaceutical Company, Istanbul, Turkey) were obtained. ELISA kits measuring IL-1β, IL-6, and TNF-α were obtained from Elabscience, TX, USA. TOS and TAC assays were purchased from Rel Assay Diagnostics, Gaziantep, Turkey. Hematoxylin Eosin (H&E) was obtained from (Merck, Darmstadt, Germany). The following antibodies were utilized: Nrf2 (Anti-Nrf2 antibody, Abcam, Boston, MA, USA, Catalog #: ab31163), HO-1 (Anti-HO-1 antibody, Abcam, Boston, MA, USA, Catalog #: ab13243). Fluorescein-5-Isothiocyanate (FITC; Abcam, secondary antibody, Boston, MA, USA, Catalog #: ab6785) and Texas Red (secondary antibody, Abcam, Boston, MA, USA, Catalog #: ab6719).
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3

Immunohistochemical Analysis of Neoangiogenesis

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To determine the newly formed vessels in gastrocnemius muscles after the hADSCs administration, the frozen sections were stained immunohistochemically. The frozen sections were incubated with antibodies directed against rat CD31 and rabbit CD146, α-SMA (Abcam). Additionally anti-F4/80 and anti-CD206 antibodies (Abcam) were used to identify M2 macrophages. Subsequently, sections were incubated with a secondary antibodies conjugated with Texas Red, FITC, or Alexa Fluor (Abcam). Sections were mounted in VECTASHIELD Mounting Medium with DAPI (Vector Laboratories). Imaging of the fluorescence of the stained sections was performed with the confocal microscope LSM710.
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4

Evaluating Antioxidant Effects of Indomethacin

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IND (Endol 25 mg; 25 cap.) was purchased from DEVA Holding A.S. (Istanbul, Turkey); esomeprazole (ESO; Nexium 40 mg; 28 tablets) was procured from Astra-Zeneca Pharmaceutical Company (Istanbul, Turkey). Sephadex LH20 column was purchased from Merck (Darmstadt, Germany). IL-1 β, IL-6, and TNF-α were purchased from Elabscience (Houston, TX, USA). Total antioxidant capacity (TAC) and total oxidant capacity (TOC) colorimetric kits were purchased from Rel Assay Diagnostics (Gaziantep, Turkey). Hematoxylin–eosin (H and E) was obtained from Merck (Darmstadt, Germany). Nrf2 (Anti-Nrf2 antibody, Catalog #: ab31163), HO-1 (Anti-HO-1 antibody, Catalog #: ab13243), and IL-33 (Anti-IL-33 antibody, Catalog #: ab118503) were obtained from Abcam (Boston, MA, USA). Fluorescein-5-Isothiocyanate (FITC; secondary antibody, Catalog #: ab6785) and Texas Red (secondary antibody, Catalog #: ab6719) were purchased from Abcam (Boston, MA, USA).
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5

Immunohistochemical Analysis of Lung Pathology in PAH

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The 5-μm serial coronal sections of the lungs of PAH rats were deparaffinized and washed. Epitope retrieval was performed using Target Retrieval Solution (Dako, Gostrup, Denmark). The sections were then washed with PBS and nonspecific binding was blocked with Protein Block, Serum Free (Dako). Primary antibodies targeting the following proteins were used for immunohistochemistry: α-smooth muscle actin (αSMA, 1:50, mouse, Abcam, Cambridge, UK), proliferating cell nuclear antigen (PCNA, 1:100, mouse, Abcam), HGF (1:50, rabbit, Abcam), vimentin (1:100, rabbit, Abcam), and Texas red (1:200, rabbit, Abcam).
The primary antibody staining was visualized using fluorescence-conjugated secondary antibodies (Life Technologies, Grand Island, NY, USA). Haechst33342 (Dojindo, Kumamoto, Japan) as used after incubation with the secondary antibodies, for nuclear counterstaining21 (link).
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6

Chromosomal FISH Probe Labeling and Sperm Scoring

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Painting probes were used for chromosomes SSCX and SSCY and for the autosomal controls SSC13 and SSC18. These probes were produced by degenerate oligonucleotide-primed polymerase chain reaction from flow sorted (SSC13, SSC18, and SSCY) or microdissected (SSCX) chromosomes. The SSCX probe was labeled with biotin, the SSCY probe with biotin and digoxigenin, and chromosomes 13 and 18 with digoxigenin. Biotin-labeled probes were revealed in red using Alexa 594 conjugated to streptavidin and amplified with rabbit anti-streptavidin coupled to Texas Red (Abcam, Cambridge, UK) and Alexa 594 conjugated donkey anti-rabbit antibodies. Digoxigenin-labeled probes were revealed in green by FITC conjugated mouse anti-digoxigenin and amplified with Alexa 488 conjugated goat anti-mouse and donkey anti-goat coupled to Alexa 488 (Molecular Probes, Eugene, OR, USA) antibodies.
Slides were analyzed under a Zeiss microscope fitted with a triple bandpass filter. More than 10,000 sperm nuclei were scored for each experiment. Only spermatozoa with signals of equivalent intensity and separated by a distance at least the size of one signal were counted.
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