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32 protocols using femtotip

1

Needle Assay for Chemotaxis Dynamics

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A needle assay was performed as described (Iijima and Devreotes, 2002 (link); Zhang et al., 2010 (link); Wang et al., 2011b (link); Chen et al., 2012 (link)). Cells were cultured in HL5 medium, washed twice with DB, and shaken for 1 h before being induced to differentiate with 100 nM cAMP pulses at 6-min intervals for 4 h. Cells were then plated on a chambered coverslip (Lab-Tek; Nalgen Nunc, Rochester, NY). A cAMP gradient was produced by a micropipette (Femtotips; Eppendorf, Hamburg, Germany) containing 1 μM cAMP and a microinjector with a compensation pressure of 100 hPa (FemtoJet; Eppendorf). Images of moving cells were recorded at 30-s intervals for 20 min using a DMI6000 (Leica) and a Yokogawa CSU10 spinning-disk confocal microscope equipped with a 10× objective connected to a digital camera. ImageJ software (National Institutes of Health, Bethesda, MD) was used to analyze data.
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2

Microinjected Fluorescent Protein Labeling of Cerebellar Purkinje Cells

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With aid of the microinjection technique yellow fluorescent protein-actin plasmids (pEYFP-actin; 0.195 μg/μl; custom made) were injected into single juvenile (group 2) and mature (group 3) PC cell nuclei of cerebellar slice cultures. Either sterile glass capillaries (diameter: 0.2–0.5 μm, Femtotips; Eppendorf, Germany) or capillaries (Hilgenberg, Nr. 1403512, Germany; borosilicate glass: 1.5 mm/0.2 mm; Puller: Sutter Instruments P97, USA) were filled with 2 μl of plasmid solution. Using an inverted microscope equipped with long-distance phase-contrast optics (Axiovert 35, Zeiss, Germany), PCs were imaged in slice cultures. During microinjection cultures were kept at 37°C on a heating stage. Application settings of the pressure injection devices (InjectMan NI2 and FemtoJet; Eppendorf) were set to inject with 80 hPa for 0.5s The constant pressure was defined as 60 hPa. After microinjection, nutrient medium was replaced carefully and slice cultures then further incubated for at least 24 h to receive a sufficient signal.
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3

Microsurgical Isolation of Cytoplasmic Fibers

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A glass capillary (Femtotips, Eppendorf AG, Hamburg, Germany) with opening diameter of 0.2 μm to 0.5 μm was mounted on a manual micro-manipulator (Leica, Wetzlar, Germany) and used to perform microsurgery on cells. Isolation of the fiber through microsurgery was successfully performed on cells that had a thin stretch of cytoplasm between the branches of adhesive pattern (Fig. 1A,B). In these cases, the hole in the cytoplasm enlarged spontaneously after an initial small cut, and closed back only over long periods (~hours), thus allowing sufficient time for mechanical probing of the isolated fiber. However, if adjacent focal adhesions were disrupted, injury and fiber manipulation led to the progressive detachment of cells from the patterns, in which case the experiments were not pursued.
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4

Regulation of Adrenal Chromaffin Cell Exocytosis

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Adrenal chromaffin cells were injected with 5 μM of the GST-fusion peptides of cortactin SH3, SH3W525K or the N-WASP PRD by using an InjectMan system (Eppendorf, Hamburg, Germany) and 0.5 μm-diameter Femtotips (Eppendorf, Hamburg, Germany). All GST-peptides were injected in a buffer solution containing in mM: 139 K+- glutamate, 20 PIPES, 5 EGTA, 2 ATP-Mg2+, pH 6.6, in the presence of 4% Lucifer yellow, a fluorescent dye that allowed us to identify the injected cells. The injection time was 0.2 s at a pressure of 120 hPa. Then, ACCs were kept in the culture medium at 37°C for 30 min.
For transfections, ACCs were electroporated using an Amaxa Nucleofector 4D (Lonza, Cologne, Germany) according to the manufacturer’s instructions. After transfection, ACCs were cultured in Dulbecco’s modified F-12 medium supplemented with 10% fetal bovine serum and kept at 37°C in a 5% CO2 atmosphere, for at least 48 h prior to experimentation.
To study the role of actin polymerization in exocytosis, ACCs were incubated with 2 μM Latrunculin A (LatA), or its vehicle dimethyl sulfoxide (DMSO) 10 min prior to experimentation and throughout the test. To evaluate the role of ERK1/2 signaling in exocytosis, ACCs were incubated with 10 μM of U0126, or its inactive analog U0124, 15 min prior to experimentation and throughout the test.
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5

Microinjection of Fluorescent Markers

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About 2 mM (proteo)liposomes and 10 µg/ml DAPI (4′,6-diamidino-2-phenylindole; Sigma) (injection marker) in HB150 were filled in Femtotips (Eppendorf); 1 × 104 HeLa cells were plated on poly-l-lysine (Sigma-Aldrich)-coated 12 mm coverslips (Marienfeld GmbH) and then the coverslip was placed into a 35-mm petri dish (Becton Dickinson) filled with pre-warmed injection medium (F12 medium (Invitrogen), supplemented with 10% FCS, 10 mM HEPES (pH7.5), and 100 units/ml each of penicillin and streptomycin). Microinjection was performed using a Femtojet (Eppendorf) and Injectman micromanipulator (Eppendorf) under a Leica DMIL inverted microscope for 5 min per coverslip. After microinjection, the cells were incubated at 37 °C in the cell culture medium and then fixed with 4% paraformaldehyde (Sigma-Aldrich) in PBS for 10 min followed by immunocytochemistry using antibodies specific for organelles as indicated. To label Tfn-positive endosomes, microinjection was performed in 5 µg/ml Alexa488-, Alexa568-, or Alexa633-Tfn-containing injection medium for 5 min. After microinjection, the cells were incubated for 5 min at 37 °C in the cell culture medium, then were fixed with 4% paraformaldehyde (Sigma-Aldrich) in PBS for 10 min. To take time-lapse images, injected cells were quickly set on an LSM 780 confocal microscope (Carl Zeiss).
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6

Dictyostelium Cell Chemotaxis Assay

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Gradient stimulation assay by cAMP-filled needle was performed as per the established protocol106 , 107 . Dictyostelium cells co-expressing PHcrac-mCherry and GFP-R(+8)-Pre were differentiated (as described in the ‘Cell differentiation’ section) for 5.5-6.5 hours and were put under cAMP gradient. Cells were pre-treated with LatA to inhibit cytoskeletal activities. A 10 μM cAMP- filled micropipette (Femtotips, Eppendorf) connected to a FemtoJet Microinjector (Eppendorf) was used to provide the gradient stimulation. The microinjector was employed in a continuous injection mode with a compensation pressure of 70 hPa. Stimulation was induced by suddenly bringing the micropipette (using the micromanipulator) close to the (x,y,z) coordinate of the cell that was being imaged and putting it at one side of that cell.
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7

Microinjection of Fluorescent Tracers into HeLa Cells

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A total of 2 mM (proteo)liposomes and 10 µg/mL DAPI (injection marker) in HB150 were filled in Femtotips (Eppendorf). The 1 × 104 HeLa cells were plated on poly-l-lysine (Sigma-Aldrich)-coated 12-mm coverslips (Marienfeld GmbH) and then the coverslip was placed into a 35-mm Petri dish (Becton Dickinson) filled with prewarmed injection medium [F12 medium (Invitrogen), supplemented with 10% FCS, 10 mM Hepes (pH 7.5) and 100 units/mL each of penicillin and streptomycin]. Microinjection was performed using a Femtojet (Eppendorf) and Injectman micromanipulator (Eppendorf) under a Leica DMIL inverted microscope for 5 min per coverslip. After microinjection, the cells were incubated at 37 °C in the cell culture medium and then fixed with 4% paraformaldehyde (PFA) (Sigma-Aldrich) in PBS for 10 min followed by immunocytochemistry using antibodies specific for organelles as indicated. To label transferrin-positive endosomes, microinjection was performed in 5 µg/mL Alexa Fluor 488-, Alexa Fluor 568-, or Alexa Fluor 633-transferrin–containing injection medium for 5 min. After microinjection, the cells were incubated at 37 °C in the cell culture medium, then fixed with 4% PFA in PBS for 10 min.
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8

Microinjection and Axonal Transport Imaging

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Dissociated SCG neurons were microinjected using a Zeiss Axiovert S100 microscope with an Eppendorf FemtoJet microinjector and Eppendorf TransferMan® micromanipulator. Plasmids were diluted in 0.5× PBS (without CaCl2 and MgCl2) and filtered using a Spin-X filter (Costar). The mix was injected directly into the nuclei of SCG neurons using Eppendorf Femtotips. Approximately 100 neurons were injected per dish. Injected plasmids were allowed to express for 16 h before CCCP treatment. Plasmids were injected at the following concentrations: 30 ng/μl NMNAT2-EGFP, 30 ng/μl pDsRed2-N1. Time-lapse imaging of axonal transport was performed on an Olympus IX70 imaging system with 100×/1.35 Oil objective. During imaging, cell cultures were maintained at 37 °C and 5% CO2 in an environment chamber. Images were captured at 4 frames per sec for 2 min. Three neurites per condition were imaged in every individual experiment.
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9

Fabrication of Nanopipettes and Microinjection Pipettes

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To fabricate nanopipettes, borosilicate glass filaments (outer diameter 1.00 mm, inner diameter 0.58 mm) were pulled to an outer diameter of approx. 100 nm. The P2000 puller (Sutter Instruments) used the following program:
Line1: HEAT:350, FIL:3, VEL:30, DEL:220, PULL:0
Line2: HEAT:330, FIL:2, VEL:27, DEL:180, PULL:250
For comparison, microinjection pipettes (Femtotips, Eppendorf) with an inner diameter of 0.5 μm were purchased. Both pipette types were filled from the back with a microloader (Eppendorf).
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10

Visualizing Chemotactic Gradients

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Cells were seeded in a 1 well chamber (Nalge Nunc International) coated with 0.2% gelatin and starved for 4 hours before the experiments. Cells were then imaged with a Zeiss Laser Scanning Microscope 710 with a 40×, 1.3 NA Plan-Neofluar objective lense. To visualize the gradient, chemoattractants were mixed with fluorescent dye Alex 633 from Thermo Scientific (Waltham, MA) and released from a microinjector (Eppendorf, Hamburg, Germany) connected to a Femtotips (Eppendorf).
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