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Iscript advanced cdna synthesis kit for rt pcr

Manufactured by Bio-Rad
Sourced in United States

The IScript Advanced cDNA Synthesis kit is a laboratory equipment product designed for reverse transcription-polymerase chain reaction (RT-PCR) applications. It provides the necessary reagents and components to convert RNA into complementary DNA (cDNA) for further analysis and amplification.

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6 protocols using iscript advanced cdna synthesis kit for rt pcr

1

Quantifying GDF15 mRNA Expression

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Total RNA was extracted from MMNK-1, HuCCT-1, and TFK-1 cells using an RNeasy® Mini Kit (Qiagen, Hilden, Germany). The RNA concentration was measured using a NanoDrop 2000 instrument (Thermo Fisher Scientific). The cDNA templates were synthesized using an iScript Advanced cDNA Synthesis Kit for RT–PCR (Bio-Rad, Hercules, CA, USA) and a C1000 Touch™ Thermal Cycler (Bio-Rad). Real-time PCR was performed using QuantStudio 3 (Thermo Fisher Scientific) and TaqMan Gene Expression Assays (Thermo Fisher Scientific) with the following primers: GDF15 Hs00171132_m1 (catalogue no. 4331182) and GAPDH Hs02786624_g1 (catalogue no. 4331182). The mix was heated at 95 °C for 20 s and then amplified at 95 °C for 1 s and 60 °C for 20 s in 40 cycles. The Ct (threshold value) of each sample was obtained according to the threshold cycles with the software provided with the equipment, and the relative expression of the MIC-1 mRNA was renormalized to the expression of the GAPDH mRNA.
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2

Exosomal RNA Extraction and cDNA Synthesis

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Total exosomal RNA was extracted by a commercial kit (PureLink RNA Micro kit; Invitrogen, Carlsbad, California, USA). According to the manufacturer’s instructions, RNA was extracted, purified, and eluted in a final volume of 15 µl and stored at −80°C.
Synthesis of cDNAs was carried out using a commercial kit (iScript Advanced cDNA synthesis kit for RT-PCR; Biorad, Hercules, California, USA) and a preamplification step was included (obtained by the use of SsoAdvanced PreAmp Supermix; Biorad, Hercules, California, USA) to improve mRNA detection and measurement. Preamplification primer mix included the genes HSD11B2 and β-2 microglobulin (B2M).
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3

Quantitative Analysis of Gene Expression in C. elegans

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Wild–type animals and daf-2 mutants were individually synchronized at 15 °C. Animals were transferred to 20 or 25 °C, after cultivation at 15 °C for 5 days until they passed the L1–L3 larval stage, because daf-2 mutants show a constitutive dauer larva formation phenotype at 25 °C. Messenger RNA was isolated using the RNeasy kit (Qiagen). The isolated messenger RNA (100 ng) was reverse-transcribed to cDNA using the iScript Advanced cDNA Synthesis kit for RT-PCR (Bio–Rad). Quantitative PCR was performed using primers specific to the genes, Sso Fast EvaGreen Supermix (Bio–Rad) and a DNA Engine Peltier Thermal Cycler–CFX96 (Bio–Rad). Triplicate samples of each dilution were used for quantitative PCR. The average expression of each gene was normalized to that of the house–keeping gene lmn-1 as a reference34 (link). The following sets of primers were used for the detection of cgt-1; 5′-GCGATTTTTATGAGACCCGATG-3′ and 5′-CGAACATACAACGCCGAGAA-3′, cpr-1; 5′-AGCTGGATGCAAACCATACC-3′ and 5′-GGAACAGCGTAGGCAGAGAC-3′, dhs-4; 5′-CTTCGATGTTTGACGCCACT-3′ and 5′-CGACCATTGCCTGAGCTTT-3′, dmd-7; 5′-AACGCGAACAGCTAAATGGA-3′ and 5′-GCGTGCCCTTTCAGTACAAC-3′, gpa-7; 5′-TCGACGCAGCAATGAATACC-3′ and 5′-TGCCCTCCAACATCTATCACTC-3′, gpdh-1; 5′-GGGTGACAACGGATTATGAGG-3′ and 5′-CCGACGGAACTTGGGTAGAA-3′, M60.2; 5′-AAGAAGAGCCCAGACCACGA-3′ and 5′-CATCCGAGGCAATGAAGTTGT-3′.
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4

Vulvar SCC Total RNA Extraction

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Total RNA was extracted using miRNeasy kit (Qiagen, Hilden, Germany) and QIAcube (Qiagen) from frozen tissue of 12 vulvar SCC stored at – 80°C. The quantity and quality of RNA were measured using a spectrophotometer QIAxpert System (Qiagen). For cDNA synthesis, 1 μg of total RNA was reverse-transcribed in a 20 μL reaction volume using iscript Advanced cDNA synthesis Kit for RT-PCR according to the manufacturer's instructions (Bio-Rad Laboratories, Oslo, Norway).
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5

Reverse Transcription and PCR Analysis

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One µg of total RNA was reverse-transcribed in a 20 µL reaction volume using iScript Advanced cDNA Synthesis Kit for RT-PCR according to the manufacturer’s instructions (Bio-Rad, Hercules, CA, USA). Primers used for PCR reactions are listed in Supplementary Table 3. The PCR amplifications were run on a C-1000 Thermal cycler (Bio-Rad) with an initial denaturation at 94°C for 30 sec followed by 35 cycles at 98°C for 7 sec, 60°C for 30 sec, and a final extension at 72°C for 1 min. Three µL of the PCR product were stained with GelRed (Biotium, Hayward, CA, USA), analyzed by electrophoresis through 1.0% agarose gel, and photographed. The remaining PCR products were purified using the MinElute PCR Purification Kit (Qiagen) and sequenced using an Applied Biosystems SeqStudio Genetic Analyzer system with BigDye™ Terminator v1.1 Cycle Sequencing Kit (ThermoFisher Scientific, Waltham, MA, USA) according to the company’s recommendations. The basic local alignment search tool (BLAST) software (BLAST; https://blast.ncbi.nlm.nih.gov/Blast.cgi; accessed on 15 April 2023) was used for computer analysis of sequence data (11 (link)). The BLAT alignment tool and the human genome browser at the University of California, Santa Cruz (UCSC) were also used to map the sequences on the Human GRCh37/hg19 assembly (BLAT; http://genome.ucsc.edu/cgi-bin/hgBlat; accessed on 15 April 2023) (12 ).
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6

Cerebellar Gene Expression in ATXN1[82Q] Mice

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Cerebellar tissue from anterior and nodular regions of 16 control and 12 ATXN1[82Q] mice were collected at P10, P20, P30 and 6 weeks of age from ATXN1[82Q] mice and immediately frozen in liquid nitrogen. Samples were homogenized with TRIzol reagent (Thermo Fisher Scientific) and total RNA was isolated and measured with a NanoDrop 2000 (Thermo Fisher Scientific). From each sample 1 µg of RNA was reverse transcribed into cDNA using the iScript Advanced cDNA Synthesis kit for RT-PCR (Bio-Rad 172-5037). The cDNA was diluted 3-fold and 2 µl were used in a quantitative PCR (qPCR) reaction with the SsoAdvanced Universal Probes Supermix (Bio-Rad 172-5280).
Triplicates were used for each biological sample and Rn18s, Rpl13a and PGK were used as housekeeping genes. Samples were run on a CFX96 Real-time PCR detection system (Bio-Rad). Relative transcript levels were measured using the delta-delta Ct method in order to calculate the relative fold gene expression. Primers and probes used in this experiment were the following: ATXN1[82Q]-forward: 5′-AGAGATAAGCAACGACCTGAAGA-3′; ATXN1[82Q]-reverse: 5′-CCAAAACTTCAACGCTGACC-3′; ATXN1[82Q] probe (Roche 4688597001), Taqman assay IDs Rn18s (Mm03928990_g1), Rpl13a (Mm01612987_g1) and Pkg1 (Mm00435617_m1). Samples were excluded if the reference gene failed.
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