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12 protocols using evolve 512 emccd camera

1

Live-Cell Imaging of Neuronal and Vesicular Dynamics

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Live-cell imaging experiments were performed in an inverted microscope Nikon Eclipse Ti-E (Nikon), equipped with a Plan Apo VC 100x NA 1.40 oil and a Plan Apo VC 60x NA 1.40 oil objective (Nikon), a Yokogawa CSU-X1-A1 spinning disk confocal unit (Roper Scientific), a Photometrics Evolve 512 EMCCD camera (Roper Scientific) and an incubation chamber (Tokai Hit) mounted on a motorized XYZ stage (Applied Scientific Instrumentation) which were all controlled using MetaMorph (Molecular Devices) software. Coverslips were mounted in metal rings and imaged using an incubation chamber that maintains temperature and CO2 optimal for the cells (37°C and 5% CO2). Neuron live imaging was performed in full conditioned medium and fresh medium was added to COS-7 before imaging.
Time-lapse live-cell imaging of EB3-RFP was performed with a time acquisition of 1 s. NF186-RFP alone was acquired at 2 frames per second. NPY-GFP, GFP-Rab6, Rab11-GFP or Rab5-GFP, alone or in combination with NF186-RFP were acquired at 10 frames per second.
For simultaneous imaging of green and red fluorescence, we used ET-mCherry/GFP filter set (59022; Chroma) together with the DualView (DV2; Roper) equipped with the dichroic filter 565dcxr (Chroma) and HQ530/30 m emission filter (Chroma).
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2

Single-molecule microtubule dynamics assay

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Chamber preparation and microscopy were performed as described (Volkov et al., 2018 (link)). In brief, both coverslips and slides were cleaned in oxygen plasma, immediately silanized, and later assembled in a chamber using double-sided tape. The chambers were first incubated with ~0.2 µM anti-DIG antibody (Roche) and passivated with 1% Pluronic F-127, followed by GMPCPP seeds (diluted 1:200 – 1:1000) and then the reaction mix. The reaction mix contained MRB80 buffer supplemented with 8 µM tubulin (4–6% labeled with HiLyte-488), 1 mM GTP, 1 mg/ml κ-casein, 0.01% methylcellulose, 4 mM DTT, 0.2 mg/ml catalase, 0.4 mg/ml glucose oxidase and 20 mM glucose; this mix was centrifuged in Beckman Airfuge for 5 min at 30 psi before adding to the chamber.
Imaging was performed at 30°C using Nikon Ti-E microscope (Nikon) with the perfect focus system (Nikon) equipped with a Plan Apo 100 × 1.45 NA TIRF oil-immersion objective (Nikon), iLas2 ring TIRF module (Roper Scientific) and a Evolve 512 EMCCD camera (Roper Scientific). Images were acquired with MetaMorph 7.8 software (Molecular Devices). The final resolution was 0.16 µm/pixel. The objective was heated to 34°C by a custom-made collar coupled with a thermostat, resulting in the flow chamber being heated to 30°C. All images were analyzed using Fiji (Schindelin et al., 2012 (link)).
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3

Live-Cell Imaging of Subcellular Dynamics

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Live-cell imaging experiments were performed on an inverted Nikon Eclipse Ti–E confocal microscope equipped with a perfect focus system (Nikon), a CSU–X1–A1 Spinning Disc unit (Yokogawa), a Photometrics Evolve 512 EMCCD camera (Roper Scientific) and a Plan Apo VC 100× N.A.1.40 oil objective. Coverslips were mounted in a Ludin chamber (life imaging services) and maintained in culture medium at 37°C and 5% CO2 in a stage incubator (Tokai Hit) during image acquisition.
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4

Visualizing FtsZ-RFPT Cell Cycle Dynamics

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Cells were grown in M9 minimal medium supplemented with 0.2% fructose and 1 μg/ml thiamine to exponential phase and then spread on a 1% (w/v) agarose pad of the same medium for microscopic analysis. Septum accuracy was determined in snapshot cell images acquired using a DM6000-B (Leica) microscope and analyzed using MicrobeTracker. ftsZ-RFPT was introduced at the lacZ locus and expressed from the arabinose promoter using 0.02% of L-Arabinose. FtsZ-RFPT cell cycle choreography was determined in time-lapse experiments, the slides were incubated at 30°C and images acquired using an Evolve 512 EMCCD camera (Roper Scientific) attached to an Axio Observe spinning disk (Zeiss). Image analysis was done as previously described (16 ,17 ), in the cell cycle representations colors were assigned to the maximal and minimal fluorescence intensity projections observed at each time point of the time-lapse.
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5

Microscopy Experiments: Cell Imaging Protocol

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For standard microscopy experiments, cells were spread on a 1% (wt/vol) agarose pad made using M9-MM. For time-lapse analyses in liquid medium, we injected L-Ara treated cells in a PDMS microfluidic device with 1 μm deep micro-chambers. A syringe pump is used to inject fresh M9-MM that by diffusion enters the micro-chambers for a constant supply of fresh medium. For snapshots, images were acquired using a DM6000-B (Leica) microscope. For time-lapse analyses, images were acquired using an Evolve 512 EMCCD camera (Roper Scientific) attached to an Axio Observe spinning disk (Zeiss). If needed, antibiotics were added to the M9-MM agarose pads. Pictures were taken every 5 minutes. At each time point, we took a stack of 32 bright-field images covering positions 1.6 μm below and above the focal plane. The final single BF image was reconstructed using a MatLab-based script developed in the lab [24 (link)]. The fluorescent image, if needed, was taken only once, at the focal plane, to avoid photobleaching.
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6

Spinning Disk Confocal Microscopy for 3D Imaging

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Spinning disk confocal microscopy was performed on a Nikon Eclipse Ti microscope equipped with a perfect focus system (Nikon), a spinning disk-based confocal scanner unit (CSU-X1-A1, Yokogawa, Japan), an Evolve 512 EMCCD camera (Roper Scientific, Trenton, NJ) attached to a 2.0X intermediate lens (Edmund Optics, Barrington, NJ), a super high pressure mercury lamp (C-SHG1, Nikon), a Roper scientific custom-ordered illuminator (Nikon, MEY10021) including 405 nm (100 mW, Vortran), 491 nm (100 mW, Cobolt), 561 nm (100 mW, Cobolt) and 647 nm (100 mW, Cobolt) excitation lasers, a set of BFP, GFP, RFP and FarRed emission filters (Chroma, Bellows Falls, VT) and a motorized stage MS-2000-XYZ with Piezo Top Plate (ASI). The microscope setup was controlled by MetaMorph 7.7.5 software. Images were acquired using Plan Fluor Apo VC 60x NA 1.4 oil objective. The 3D image reconstruction was carried out using Huygens Professional version 18.04 (Scientific Volume Imaging, the Netherlands). The temperature was controlled by a stage top incubator INUBG2E-ZILCS (Tokai Hit).
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7

Fluorescence Microscopy Techniques for Imaging Cellular Structures

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Wide-field microscopy
measurements were performed using an Olympus IX-81 inverted microscope
combined with epifluorescence illumination and appropriate filter
sets. Images were acquired and recorded using an Olympus 60×
PlanApo (NA 1.45, oil) objective and a Zyla 4.2 PLUS CMOS camera (Andor
Technology). The microscope was operated through Micromanager software
(version 1.4.14). Confocal microscopy of fluorescent collagen fibers
was performed using an inverted Olympus IX81 combined with an Andor
Revolution illumination system and a Yokogawa CSU X1 detection system.
Images were acquired with a 60× UPlanFLN (NA 1.25, oil) objective
and recorded with an EM-CCD Andor iXon X3 DU897 camera. Confocal microscopy
of tubulin was performed at 30 °C using Nikon Ti-E microscope
(Nikon, Japan) equipped with a Nikon plan Apo 100× 1.45 NA oil
immersion objective and an Evolve 512 EMCCD camera (Roper Scientific,
Germany). Images of collagen in spherical droplets were captured with
an inverted Eclipse Ti Nikon microscope in combination with a Nikon
100× objective (NA 1.49, oil). The resulting images (Figures 1 and 6c) were obtained by a z-stack projection over a depth of 20
μm (0.2 μm step size). Images were analyzed and background
appropriately subtracted using Fiji (ImageJ).
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8

Real-time Microtubule Dynamics Visualization

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Reconstitution assay was performed as previously described (Doodhi et al., 2016) . The reaction mixtures in MRB80 buffer contained tubulin (15 mM), Rhodamine-tubulin (0.5 mM) when indicated, methyl cellulose (0.1%), KCl (50 mM), k-casein (0.5 mg/ml), GTP (1 mM), oxygen scavenging system (20 mM glucose, 200 mg/ml catalase, 400 mg/ml glucose-oxidase, 4 mM DTT), mCherry-EB3 or mCherry-EB3Dtail (20 nM each) and Kar9c-GFP (0.64 mM). Movies were acquired in TIRF mode using Nikon Eclipse Ti-E (Nikon) microscope supplemented with the perfect focus system (PFS) (Nikon), equipped with Nikon CFI Apo TIRF 100x 1.49 N.A. oil objective (Nikon). Photometrics Evolve 512 EMCCD camera (Roper Scientific) with triple-band TIRF polychroic ZT405/488/561rpc (Chroma) and tripleband laser emission filter ZET405/488/561m (Chroma), mounted in the metal cube (Chroma, 91032) together with Optosplit III beamsplitter (Cairn Research Ltd, UK) supplemented with double emission filter cube configured with ET525/50m, ET630/75m and T585LPXR (Chroma) was used to acquire the movies in stream acquisition mode (exposure time 500 ms). Kymographs were generated in ImageJ using KymoResliceWide plugin.
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9

TIRF Microscopy Setup for Live-Cell Imaging

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TIRF imaging was performed on a microscope set-up (inverted research microscope, Nikon Eclipse Ti-E), equipped with the perfect focus system (Nikon) and a Nikon CFI Apo TIRF 100/1.49 numerical aperture oil objective (Nikon). The microscope was supplemented with a TIRF-E motorized TIRF illuminator, modified by Roper Scientific/PICT-IBiSA Institut Curie, and a stagetop incubator (model no. INUBG2E-ZILCS, Tokai Hit) to regulate the temperature of the sample.
Image acquisition was performed using either a Photometrics Evolve 512 EMCCD camera (Roper Scientific) or a Photometrics CoolSNAP HQ2 CCD camera (Roper Scientific) and controlled with MetaMorph7.7 software (Molecular Devices). The Evolve EMCCD camera's final resolution was 0.066 µm/pixel, while with the CoolSNAP Myo CCD camera, it was 0.045 µm/pixel. For excitation lasers, we used 491 nm 100 mW Stradus (Vortran), 561 nm 100 mW Jive (Cobolt) and 642 nm 110 mW Stradus (Vortran). We used an ET-GFP 49002 filter set (Chroma) for imaging proteins tagged with GFP, an ET-mCherry 49008 filter set (Chroma) for imaging X-Rhodamine labelled 24 tubulin or mCherry-tagged proteins, and an ET647 for imaging Alexa647 labelled tubulin. We used sequential acquisition for the imaging experiments.
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10

Visualizing Meiotic Spindles in Cells

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Meiotic spindles were visualised by indirect immunofluorescence as described in Barton et al, 2022 (link). A rat anti-tubulin primary antibody (AbD serotec) at 1:50 dilution and an anti-rat FITC conjugated secondary antibody (Jackson Immunoresearch) at 1:100 dilution were used. In total, 200 cells were counted at each timepoint and/or for each sample. A Zeiss Axioplan Imager Z2 fluorescence microscope with a 100x Plan ApoChromat NA 1.45 oil lens with a Teledyne Photometrics Evolve 512 EMCCD camera was used to take the representative images.
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