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Ficoll paque premium 1

Manufactured by GE Healthcare
Sourced in United States, Sweden, United Kingdom

Ficoll-Paque Premium 1.073 is a sterile, pyrogen-free density gradient medium used for the isolation of mononuclear cells from whole blood or bone marrow. It is composed of sucrose and sodium diatrizoate, with a density of 1.073 g/mL.

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35 protocols using ficoll paque premium 1

1

Isolation and Culture of Immune Cells

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Single mononuclear cell suspensions were prepared in HBSS (Sigma-Aldrich) from spleen and pooled draining lymph nodes of individual mice by Ficoll-Paque PREMIUM 1.084 (GE Healthcare Bio-Sciences AB, Uppsala, Sweden) centrifugation gradients. Live cells were counted by Trypan blue exclusion, resuspended in RPMI 1640-GlutaMAX medium (Life Technologies, Carlsbad, CA, USA) supplemented with 1% penicillin/streptomycin (Life Technologies), 50 mM 2-ME (Life Technologies), and 10% FCS (Life Technologies), and cultured in the presence of PSBP (20 μg/ml) or medium alone. Plates were incubated at 37 °C in a water-saturated 5% CO2 atmosphere for 72 hours. After that, cells were processed for surface or/and intracellular cytokine staining and analyzed by FACS. Supernatants were frozen at −80 °C for cytokine quantifications.
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2

Multiparametric Immune Cell Profiling

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Mice were perfused intracardially with cold PBS, and the spinal cord was immediately collected on ice. Lymphocytes were purified using Ficoll Paque Premium 1.084 (GE Healthcare). Total lymphocyte number was measured using Automated Cell counter (Corning, NY, USA). Single-cell suspensions were stained with surface markers anti-CD4 (fluorescein isothiocyanate [FITC]), anti-CD8 (PerCP-Cy5.5), anti-B220 (allophycocyanin [APC]), and anti-CD19 (phycoerythrin [PE]). All antibodies were purchased from BD Biosciences, and the procedures were performed according to the manufacturers’ instructions. The samples were analyzed using CytoFLEX flow cytometer (Beckman Coulter, Brea, CA), and data were analyzed using CytExpert 2.0 (Beckman) or FlowJo (v.10.6.2).
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3

Isolation of Mouse Circulating PBMCs

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Circulating total PBMCs were isolated by density-gradient centrifugation method using the Ficoll–Paque technique according to the manufacturer’s protocol. Briefly, 40 µL of 2% sodium citrate (pH 7.2) was injected into the left ventricle of deeply anesthetized mice and left to circulate for 1 min, then 0.5–1 mL of whole blood was drawn via inferior vena cava puncture using a 21-gauge syringe containing 40 µL of 4% sodium citrate. Within 2 h, blood samples were diluted into 1.5 mL using sterile PBS and laid carefully on top of 1.125 mL (a ratio of 3:4) of Ficoll-Paque-Premium 1.084 (Product code:17–5446-02, GE Healthcare life sciences) and centrifuged at 300× g for 30 min at room temperature. The PBMC layer was carefully aspirated and isolated PBMCs were washed twice in Gibco® RPMI 1640 medium (Invitrogen-Thermo Fisher Scientific, Grand Island, NY, USA) and then stored in freezing medium (90% endotoxin-free FBS albumin in DMSO) at a density of 0.5 million cells/mL.
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4

Isolation and Purification of Rat Macrophages and Neutrophils

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Macrophages were obtained by peritoneal lavage. Under sterile condition, SD rats (250–300 g) were intraperitoneally injected into 20‐mL RPMI medium and peritoneal exudate cells were then harvested. After centrifuged and suspended, total cell numbers were determined by Trypan blue staining. Cells were plated in 24‐well culture plates at 2×105 cells/well in RPMI medium supplemented with 10% FBS. After 2 hours of incubation at 37°C and 5% CO2, non‐adherent cells were washed away. The purity of macrophage was >90%, assessed by fluorescence‐activated cell sorting (FACS) analysis using anti‐CD68 (AbD Serotec, #MCA341) and anti‐granulocytes (BD Biosciences, #550002) (Figure S1B).
Neutrophils were obtained by density centrifugation over a Ficoll gradient (Ficoll‐Paque PREMIUM 1,084; GE Healthcare). After rats were anesthetized with 3% pentobarbital sodium (30 mg/kg) intraperitoneally, blood was taken by puncture of the left heart ventricle. Neutrophils were harvested according to the manufacturer's instructions. To assess the purity, positively selected neutrophils were made into cells smear. After being stained in Wright staining, 200 cells were performed by cell differential counts. Neutrophils were 91.3±1.2% (n=4). The purity of neutrophils was also >90%, assessed by FACS analysis using anti‐granulocytes and anti‐CD11b (Figure S1C).
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5

Dusp5 Protein Expression Analysis

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Cerebral microvessels, liver, brain and spleen tissues were isolated from Dusp5 KO and FHH.1BN rats as described above. White blood cells were also harvested using Ficoll-Paque Premium 1.084 (GE Healthcare) according to the manufacturer's protocol. A 100 µg aliquot of protein isolated from brain, liver, spleen and white blood cells (WBCs) and a 40 µg aliquot of protein isolated from cerebral microvessels was separated on a 10% SDS-PAGE gel, transferred to nitrocellulose membranes which were probed with antibodies to Dusp5 (H00001847-M04, Abnova, Taiwan; 1∶1,000) targeting AA286-384 in the C-terminus of the Dusp5 protein and antibodies raised against p-ERK1/2, total ERK1/2 and beta-Actin as described above.
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6

Isolation of Human CD4 and CD8 T Cells

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Human CD4 and CD8
T cells were purified
from the peripheral blood of healthy donors by Ficoll-Paque density
gradient centrifugation. Fresh blood was diluted 1:1 in PBS, layered
onto Ficoll-Paque Premium 1.084 (GE Healthcare, Chicago, IL) and centrifuged
at 400 × g for 40 min without braking. Peripheral
blood mononuclear cells were isolated, and subsequently washed 3×
in Isolation Buffer (PBS, 0.5% BSA, 2 mM EDTA). CD4 or CD8 T cells
were purified using negative isolation kits (Miltenyi, Bergisch Gladbach,
Germany) on an AutoMACS Pro Separator (Miltenyi) according to the
manufacturer’s protocol. Cell purity was assessed by flow cytometry
on a MACSQuant Analyzer 10 (Miltenyi) and cell counting performed
using a hemocytometer. Cells were washed in PBS, pelleted, and flash
frozen in liquid nitrogen.
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7

Isolation and Culture of Mouse CD133+ Cells

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The tibias and femurs from 8-week-old male C57BL/6 mice were extracted, and the bone
marrow was flushed as described previously43 (link). Bone marrow mononuclear cells (BMNCs) were then isolated by density-gradient
centrifugation with Ficoll-Paque PREMIUM 1.084 (GE Healthcare, Little Chalfont, United
Kingdom). CD133+ cells were separated from BMNCs with anti-mouse-prominin-1
microbeads (Miltenyi MACS; Miltenyi Biotec, Auburn, CA, USA) using a magnetically
activated cell sorter (Miltenyi Biotec). Freshly isolated cells were seeded at
2×105 cells/well in 24-well plates (NEST, China) pre-coated with 0.015 mg/ml
poly-L-lysine (PLL; Sigma-Aldrich) and vitronectin (Gibco, Invitrogen, Carlsbad, CA, USA).
The cells were then cultured in alpha minimal essential medium (αMEM) supplemented with
10% fetal bovine serum (FBS), 100 IU/ml penicillin, 100 mg/ml streptomycin (Gibco), 100
ng/ml stem cell factor, 100 ng/ml FMS-like tyrosine kinase-3 ligand, 20 ng/ml
interleukin-6 and 20 ng/ml leukemia inhibitory factor (PeproTech, Rocky Hill, NJ, USA)
according to previous studies with slight modifications39,44–46 at 37°C in a
humidified atmosphere containing 5% CO2. The cells were harvested with 0.05%
trypsin/ethylenediaminetetraacetic acid (EDTA; Invitrogen) before passaging.
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8

Subcutaneous A549 Xenograft Tumor Model

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A549 cells were suspended in serum free media at a concentration of 3x106 and were subcutaneously inoculated into the right flank of 5–6 week old athymic nude mice (11 mice/group). When the average tumor size was ~100mm3, mice received DMSO (50μL), C188-9 (50mg/kg twice daily in 25μL DMSO) or PL (30 mg/kg once daily in 50μl DMSO) intraperitoneally 5 days/week for 3 weeks. Subcutaneous tumor volume (mm3) was calculated as 0.5 x (long dimension) x (short dimension)2. At the end of 3 weeks, mice were euthanized. Tumors were excised, weighed and frozen in liquid nitrogen. Whole blood was obtained by cardiac puncture and anticoagulated. Peripheral blood mononuclear cells (PBMC) were isolated from whole blood by sedimentation over Ficoll-Paque PREMIUM 1.084 according to the manufacturer’s instruction (GE Healthcare Life Sciences, cat #17-5442-02). Total protein was extracted from tumor pieces following sonication as described in section 2.3.
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9

Isolation and Sorting of Tumor-Infiltrating Cells

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Single cell suspensions from tumors were prepared as described above. For T cell isolations, single cell suspensions were enriched for mononuclear cells using Ficoll-Paque Premium 1.084 (GE Healthcare). For isolation of myeloid cells, single cell tumor suspensions were enriched for CD45+ cells using EasySep biotin positive selection kit (Stemcell Technologies). Enriched cells were stained for 30 min at 4°C with directly conjugated antibodies diluted in FACS buffer containing anti-CD16/32 (BioXCell) to block non-specific binding. Cells were washed again with FACS buffer and filtered over a 70μm mesh. Immediately prior to sorting, DAPI was added to exclude dead cells. Cells were sorted on a BD FACSAria Fusion and BD FACSAria2. Sorted T cells were collected directly in lysis buffer (Invitrogen) for RNA sequencing or in RPMI (GIBCO), 10% FCS (Benchmark), Pen/Strep/Glut (Invitrogen) and 50μM β-mercaptoethanol (GIBCO) at 4°C for further use ex vivo. Sorted myeloid cells were collected in DMEM (GIBCO), 10% FCS (Benchmark), Pen/Strep/Glut (Invitrogen) at 4°C for further use ex vivo.
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10

Multiparametric Flow Cytometry Analysis

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Fluorescein isothiocyanate (FITC)-conjugated mouse monoclonal antibody (mAb) to human EpCAM (clone 9C4) and phycoerythrin (PE)-conjugated mouse mAb to CD45, together with purified isotype-matched IgG1 and IgG2b, were purchased from BioLegend (San Diego, CA). The source and use of other antibodies has been previously reported, including those against human RANKL, HIF-1α, NRP-1, and VEGF, as well as those to phosphorylated c-MET and the p65 subunit of NFκB [22] (link). The sources and purification of heptamethine carbocyanine dyes have been reported previously [19] (link), [20] (link). Ficoll-Paque PREMIUM 1.084 was purchased from GE Healthcare (Piscataway, NJ), and Histopaque-1077 was purchased from Sigma-Aldrich (St. Louis, MO).
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