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12 protocols using fluorescein labeling kit nh2

1

Immunophenotyping of T, B, and NK Cells

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The following antibodies were used in this study for the isotype control: anti‐CD3/FITC (Cat. no. 349201) for detection of T cells; anti‐CD4/FITC (Cat. no. 347413) for helper T cells; anti‐CD8/PE (Cat. no. 3473313) for cytotoxic T cells; anti‐CD19/FITC (Cat. no. 340409) for B cells; and anti‐CD56/PE‐CE594 (Cat. no. 561903) for NK cells. The mentioned antibodies were purchased from BD Bioscience. The anti‐Klotho antibody (Cat. no. KO603) was purchased from Trans Genic Inc (Kobe, Japan) and conjugated with PE using a Fluorescein Labeling Kit‐NH2 (Dojindo Molecular Technologies, Kumamoto, Japan).
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2

Basophil Enrichment and Characterization

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Ficoll-Paque Plus was sourced from GE Healthcare Japan Corporation (Tokyo, Japan). EasySep™ Human Basophil Enrichment Kit was sourced from STEMCELL Technologies (Vancouver, Canada). Reverse-phase HPLC was sourced from Shimadzu (Kyoto, Japan). Tetramethylrodamin B isothiocyanate (TRITC)-phalloidin and adenosine were sourced from Sigma-Aldrich Japan (Tokyo, Japan). Human IgE Quantitative ELISA kit was sourced from Bethyl Laboratories, Inc., (Montgomery, TX, USA). Human IgE Purified (AG30P) was sourced from MILLIPORE (Burlington, MA, USA). Human IgE (P50) was sourced from Nordic-MUbio (Susteren, the Netherlands). Human IgE (HE1) was sourced from Bioporto Diagnostics A/S (Hellerup, Denmark). Fluorescein Labeling Kit-NH2 was sourced from Dojindo laboratories (Kumamoto, Japan). Anti-IgE receptor-FITC, anti-CD123-PE, anti-CD203c-APC, anti-IgE-APC, and anti-CD203c-FITC were sourced from BioLegend (San Diego, CA, USA). Allergenicity® Kit was sourced from Beckmann Coulter (Brea, CA, USA). IL-3 was sourced from R&D Systems Inc (Minneapolis, MN, USA).
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3

EGFR Binding Nanobody Characterization

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The specific binding of Nanobody-R9MTG or Nanobody-K to EGFR on the cell surface was analyzed by flow cytometry. For this, forty-seven nM of Nanobody-R9MTG or Nanobody-K were labeled with Fluorescein Labeling kit-NH2 (Dojindo, Inc., Kumamoto, Japan) and mixed with 2 × 106 EGFR-positive A431 cells. The mixtures were incubated for 60 min on ice. The cells were washed three times with PBS containing 0.01% bovine serum albumin and analyzed by flow cytometry (FACS Accuri 6; BD Biosciences, Franklin Lakes, NJ, USA).
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4

Fluorescent-labeled receptor binding assay

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Fluorescein isothiocyanate-labeled sCD16 (FITC-sCD16) and sEGFR (FITC-sEGFR) were prepared using the Fluorescein Labeling Kit-NH2 (Dojindo Laboratories, Kumamoto, Japan) to confirm the cross-linking efficiency between sCD16 and EGFR-positive A431 cells and sEGFR and CD16/CHO cells [27 (link)]. Approximately 1 × 106 target cells were incubated for 30 min on ice with 200 pmoles of hEx16-HL or hEx16-LH. After washing with PBS, the cells were exposed for 30 min to 1 µg of FITC-sCD16 or FITC-sEGFR on ice. Stained cells were subsequently analyzed by flow cytometry (FACSCalibur, Becton Dickinson, San Jose, CA, USA).
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5

Fluorescent Labeling of MyHC Antibodies

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The purified anti-MyHC1, anti-MyHC2A, anti-MyHC2X, and anti-MyHC2B antibodies were conjugated to the Alexa Fluor 647, Alexa Fluor 350, Fluorescein, and AnaTag™ HiLyte™ Fluor 594 fluorophores, respectively. Conjugation reactions were carried out according to the manufacturer’s instructions for the Alexa Fluor 647 Monoclonal Antibody Labeling Kit (Life Technologies, Carlsbad, CA, USA), the Alexa Fluor 350 Antibody Labeling Kit (Life Technologies), the Fluorescein Labeling Kit-NH2 (Dojindo Laboratories, Kumamoto, Japan), and the AnaTag™ HiLyte™ Fluor 594 Microscale Protein Labeling Kit (AnaSpec, Inc., Fremont, CA, USA).
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6

Immunofluorescence Assay Protocol for Cell Analysis

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For immunofluorescence assays, cells were suspended in PBS supplemented with 0.5% bovine
serum albumin and 0.05% sodium azide (BSA-PBS). Viable cells ranging in concentration from
1×105 to 1×106 were incubated with fluorescence-labeled monoclonal
antibodies (mAbs), as described below, at 4°C for 1 hr. Stained cells were washed three
times with BSA-PBS and resuspended in BSA-PBS containing propidium iodide (10 µg/mL,
Sigma-Aldrich). Relative immunofluorescence intensities were determined by flow cytometry
using a FACS Canto™ II system (Becton Dickinson, Franklin Lakes, NJ, USA). Anti-CD4 (400×
dilution, CT4), anti-CD8 (400× dilution, CT8), anti-γδ (400× dilution, TCR1), anti-MHC
class II (100× dilution, 2G11), and anti-Bu-1b (200× dilution, 5-11G2) mAbs (all from
Southern Biotech, Birmingham, AL, USA) were used. For fluorescence labeling of mAbs,
Fluorescein Labeling Kit-NH2, HiLyte™ Fluor 555 Labeling Kit-NH2,and HiLyte™ Fluor 647 Labeling (F647) Kit-NH2 (Dojindo Laboratories, Kumamoto,
Japan) were used according to the manufacturer’s instructions.
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7

Fluorescence Microscopy of Pancreatic Cancer Cells

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The protein samples of rACG, WA20-SL-ACG, WA20-H-ACG, WA20-ΔN3ACG, and WA20 were fluorescently labeled using Fluorescein Labeling Kit-NH2 (Dojindo, Kumamoto, Japan). After cells of the human pancreatic cancer cell line BxPC-3 were cultured in 24-well plates, the cells were washed with phosphate buffered saline (PBS) and fixed in 4% paraformaldehyde for 20 min. After washing the cells with PBS three times, the cells were incubated with 1 µg/mL or 10 µg/mL of the fluorescein-labeled protein samples for 1 h at room temperature. After washing twice with PBS, the cells were observed under a fluorescence microscope.
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8

Cross-Reactivity of MERS-CoV RBD Antibodies

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To determine whether the MAbs that recognized the RBD of MERS-CoV S protein also recognized the RBDs of other coronaviruses, expression plasmids that encoded the mouse Fc-tagged RBDs of MERS-CoV, Bt-CoV-HKU4, and Bt-CoV-HKU5 (kindly supplied by Prof. George Gao, Institute of Microbiology, Chinese Academy of Sciences, Beijing, PR China) were used. HeLa 229 cells were transfected with each expression plasmid. After 32 h, the cells were fixed with methanol-acetone (1:1). The MAbs were labeled with FITC by using Fluorescein Labeling Kit-NH2 (Dojindo, Kumamoto, Japan) and the fluorescent signals on the fixed cells were observed under a fluorescence microscope. Alexa Fluor 488-labeled anti-mouse IgG antibody (Thermo Fisher Scientific) served as a positive control for detecting mouse Fc-tagged RBD proteins.
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9

Preparation and Labeling of Bacterial LPS and PGN

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P. gingivalis LPS (14F18-MM) was purchased from InvivoGen. P. gingivalis PGN was prepared as described previously [36 (link)]. FITC–E. coli LPS (L7018) and S. aureus PGN (77140) were purchased from Sigma-Aldrich. Bacterial LPS and PGN were labeled with FITC using Fluorescein Labeling Kit-NH2 (LK-01, Dojindo). Before the assays, FITC-labeled LPS was incubated with 10 mM citrate (Wako) and 0.05% (v/v) Tween-20 (Calbiochem) for 45 min at 37°C as described previously [37 (link)], and FITC-labeled PGN was incubated with 0.5 mg mL-1 lysozyme (Nacalai Tesque) for 45 min at 37°C to make a suspension. Lucifer yellow (125–06281) was purchased from Wako, and 3–5 kDa FITC-dextran (FD4) and 40 kDa FITC-dextran (FD40) were purchased from Sigma-Aldrich.
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10

Fluorescence-based Protein-RNA Interaction Assay

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For fluorescence detection, recombinant proteins (FL, polyG, and Cterm) were labeled with fluorescein using the Fluorescein Labeling Kit-NH2 according to the manufacturer’s instructions (Dojindo Molecular Technologies Inc.). CGG99 RNA was labeled with CX rhodamine using the Label IT Nucleic Acid Labeling Kit according to the manufacturer’s instructions (Mirus Bio LLC). Recombinant proteins (9 μM; 8 μM nonlabeled proteins and 1 μM fluorescently labeled proteins) were prepared in 10 mM tris-HCl buffer (pH 7.5) containing 25 mM NaCl, 10 mM MgCl2, and 12% (w/v) glycerol and were then incubated for 1 hour at 23°C. Then, 10% (w/v) 1,6-hexanediol (Sigma-Aldrich) was used to disturb weak interactions that drive LLPS. Fluorescently labeled CGG99 RNA or mTERRA (20 ng/μl) (5′-UUACCGUUACCGUUACCGUUACCG-3′) was prepared in the same buffer. For the preparation of protein/RNA complex solutions, prefolded RNAs with or without 50 μM PpIX were added to the protein solutions, which were then incubated for 1 hour at 23°C. The resultant solutions were covered with coverslips using a 0.12-mm spacer and sealed before measurement. Photobleaching was done with 100% laser power to 50% intensity using the bleaching program of the ZEN software on a Zeiss LSM780 machine. Time-lapse images were recorded every 5 s using a Zeiss Objective Plan-Apochromat 63×/1.4 oil DIC M27 for tracking photorecovery behavior.
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