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7 protocols using marimastat

1

Diverse Compound Treatments in Cell Assays

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Benzo[a]pyrene, benzo[k]fluoranthene, bosutinib, 1,2-dithiole-3-thione, flufenamic acid, MG132, PP2, Ro-31–8220 and hydrogen peroxide were purchased from Sigma-Aldrich (Taufkirchen, Germany), BPIQII, SR11302 and T-5224 from Cayman Chemicals (Ann Arbor, MI), and CH223191, cobimetinib and glutathione from Selleckchem (Houston, TX). Marimastat was purchased from Santa Cruz Biotechnology (Dallas, TX) and PD153035 from Absource Diagnostics (Munich, Germany). 3,3′,4,4′,5-Pentachlorobiphenyl (PCB126) and 2,3′,4,4′,5-pentachlorobiphenyl (PCB118) were bought from LGC Standards (Wesel, Germany) and 2,3,7,8-tetrachlorodibenzo-p-dioxin from Amchro (Hattersheim am Main, Germany). Prostaglandin D2, AREG, TGFα and EGF were purchased from PeproTech (Rocky Hill, NY). hydrogen peroxide, glutathione and the three EGFR ligands were dissolved or diluted in water, the other compounds in DMSO. Treatment time and applied concentrations of the chemicals and human recombinant proteins is indicated in the figure legends.
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2

Marimastat Pretreatment Prior to Tumstatin

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Marimastat (Santa Cruz Biotechnology Inc., Dallas, TX, USA), a broad MMP inhibitor was reconstituted in DMSO and used in some experiments at 100 μM to pre‐treat cells for 1 hr at 37°C prior to tumstatin treatment. The Marimastat was maintained throughout the tumstatin treatment.
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3

Diverse Compound Treatments in Cell Assays

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Benzo[a]pyrene, benzo[k]fluoranthene, bosutinib, 1,2-dithiole-3-thione, flufenamic acid, MG132, PP2, Ro-31–8220 and hydrogen peroxide were purchased from Sigma-Aldrich (Taufkirchen, Germany), BPIQII, SR11302 and T-5224 from Cayman Chemicals (Ann Arbor, MI), and CH223191, cobimetinib and glutathione from Selleckchem (Houston, TX). Marimastat was purchased from Santa Cruz Biotechnology (Dallas, TX) and PD153035 from Absource Diagnostics (Munich, Germany). 3,3′,4,4′,5-Pentachlorobiphenyl (PCB126) and 2,3′,4,4′,5-pentachlorobiphenyl (PCB118) were bought from LGC Standards (Wesel, Germany) and 2,3,7,8-tetrachlorodibenzo-p-dioxin from Amchro (Hattersheim am Main, Germany). Prostaglandin D2, AREG, TGFα and EGF were purchased from PeproTech (Rocky Hill, NY). hydrogen peroxide, glutathione and the three EGFR ligands were dissolved or diluted in water, the other compounds in DMSO. Treatment time and applied concentrations of the chemicals and human recombinant proteins is indicated in the figure legends.
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4

Immunocytochemistry Reagents and Protocols

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Mouse anti-VE-cadherin antibody (sc-9989) diluted 1:50 was obtained from Santa Cruz Biotechnology (Dallas, TX, USA). Cy and Alexa Fluor-conjugated secondary antibodies were acquired from Jackson Immunoresearch (Philadelphia, PA, USA) and Molecular Probes (Eugene, OR, USA), respectively, and used for immunocytochemistry. HIF2α inhibitor [51 (link)] (Axon 2034) was obtained from Axon Medchem (Hanzeplein, The Netherlands). Z-VAD-FMK was obtained from Adooq-bioscience (187389-52-2, Irvine, CA, USA) and Santa Cruz Biotechnology (sc-3067, Dallas, TX, USA). Marimastat from Santa Cruz Biotechnology (sc-202223, Dallas, TX, USA), MG-132 from Promega (G9951, Madison, WI, USA). Cytotoxgreen was obtained from Essen BioScience (Ann Arbor, MI, USA) and CellROXgreen from Molecular Probes (Eugene, OR, USA). PX-ethyl was purchased from Sigma (St. Louis, MO, USA). According to the Sigma safety data sheet, safety measures of eye shields, face shields, full-face respirator, and gloves should be taken. PX was used according to our previously reported protocol [43 (link),44 (link)] All other reagents applied in this study were used in accordance to the known literature and the supplier’s guidelines.
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5

Inhibition of ACKR1 Loss in HPMECs

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To attempt to inhibit the loss of ACKR1, HPMECs were first incubated with whole blood for 24 hours for ACKR1 induction. Cells were then washed with PBS and treated with MG-132 (20μM; CAS 133407-82-6), Marimastat (100μM; Santa Cruz, sc-202223), Bafilomycin A (100nM; EMD Millipore Cat# 5.08409.0001), GW4869 (2μM; Millipore Sigma CAS 6823-69-4) or DMSO in complete media for 6 hours. Cells were then lysed and processed for immunoblotting. For inhibition of protein synthesis, cells were treated with cycloheximide (100μg/ml; Sigma 01810) at the time of incubation with isolated PMNs for 6 hours. For inhibition of NF-κB signaling, HPMECs were pretreated with Bay 11-7082 (20μM; Sigma, B5556) for 30 minutes in complete media and then inhibitors were washed out and replaced with blood for 6 hours for ACKR1 induction.
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6

Organoid Perturbation Assay

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Organoids were grown under normal conditions for 9 days; on culture day 10, medium containing either 0.5 nM calyculin A (Gibco), 10 μM Marimastat (Santa Cruz Biotechnology) or HECD-1 (abcam) at a ratio of 1:50 was added. Fresh drug was replenished in a second medium change on day 12. Organoids were imaged by bright-field Hoffman contrast microscopy. To determine the organoid size, we manually drew ellipses tightly enclosing the structures and defined the size as the mean of the elliptic axes.
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7

Immunocytochemistry with VE-cadherin antibody

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Mouse anti-VE-cadherin antibody (sc-6458) diluted 1:50 was obtained from Santa Cruz Biotechnology (United States). Cy and Alexa Fluor-conjugated secondary antibodies were acquired from Jackson Immunoresearch (United States) and Molecular Probes (United States), respectively, and used for immunocytochemistry. Z-VAD-FMK was obtained from Adooq-bioscience (187389-52-2, United States) and Santa Cruz Biotechnology (sc-3067, United States). Marimastat from Santa Cruz Biotechnology (sc-202223, United States), MG-132 from Promega (G9951, United States). Cytotoxgreen was obtained from Essen BioScience (United States) and CellROXgreen from Molecular Probes (United States). PX-ethyl was purchased from Sigma (United States), according to Sigma safety data sheet safety measures of eyeshields, face shields, full-face respirator and Gloves should be taken. For assessing the BBB response, PX freshly made in ethanol to 400 mM stock solution was immediately diluted in the medium to the desired final concentrations and added to the cell culture. All other reagents applied in this study were used in accordance to the known literature and the supplier's guidelines.
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