The largest database of trusted experimental protocols

4 protocols using ab109219

1

Evaluating EMT Markers by qRT-PCR and Western Blot

Check if the same lab product or an alternative is used in the 5 most similar protocols
qRT‐PCR, western blot, and co‐IP assays were conducted according to the earlier description.28 The primers used for qRT‐PCR were: USP10: forward: 5‐AATAAAGGGAACTGGTGC‐3, reverse: 5‐CTATCATGGGTGTTGACGT‐3; YAP1: forward: 5‐GCAACTCCAACCAGCAGCAACA‐3, reverse: 5‐CGCAGCCTCTCCTTCTCCATCTG‐3; and GAPDH: forward: 5‐AGCCTCAAGATCATCAGCAATG‐3, reverse: 5‐CCATCACGCCACAGTTTCC‐3. The antibodies used for western blotting were: USP10 (Abcam, ab109219, 1:1500 dilution), YAP1 (Abcam, ab52771, 1:1000 dilution), vimentin (Abcam, ab92547, 1:1500 dilution), E‐cadherin (Abcam, ab40772, 1:1500 dilution), N‐cadherin (Abcam, ab18203, 1:1500 dilution), and GAPDH (Abcam, ab9485, 1:5000 dilution).
+ Open protocol
+ Expand
2

Monoclonal Antibodies for Protein Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The following monoclonal antibodies were used: USP10 (ab109219, Abcam), RUNX1 (ab240639, Abcam), FLAG-tag (cat#14793, Cell Signaling Technology), His-tag (cat#12698, Cell Signaling Technology), HA-tag (cat#3724, Cell Signaling Technology), YKL-40 (#AF2599, Novus Biologicals), Olig2 (cat# sc-293163, Santa Cruz), PDGFRα (cat# 3174, Cell Signaling Technology), MET (cat# sc-8057, Santa Cruz), COL5A1 (cat# 86903, Cell Signaling Technology) and β-actin (ab8227, Abcam). Spautin-1 (cat# 17769), an inhibitor of USP10, was supplied by Cayman. Cycloheximide (CHX, cat# C7698), a specific inhibitor for protein translation, was purchased from Sigma. MG132 (cat# S2619), the proteasome inhibitor, was supplied by Selleckchem.
+ Open protocol
+ Expand
3

Western Blot Analysis of Cell Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blot was carried out as described previously [16 (link)]. The total proteins of AGS, MKN-45 and 293T cells were extracted by using RIPA lysis buffer (KeyGEN BioTECH, China). Afterwards, the total proteins were treated with 10% SDS/PAGE Resolving Gel Master Mix (P0670-250ml, Beyotime, China) for separation, followed by transfer onto polyvinylidene fluoride (PVDF) membranes (T2234, Thermo Fisher, USA). Then, 5% skim milk was adopted to block the membranes, which were then subjected to incubation with primary antibodies overnight at 4°C. After the washes, the membranes were incubated with secondary antibodies for 1 h at room temperature. The results were then visualized and recorded. β-Actin was used as an internal reference. Bio-repeats were implemented in triplicate. The primary antibodies used in this assay include Anti-β-actin, Anti-MMP2 (ab181286, Abcam, UK), Anti-MMP9 (ab228402, Abcam), Anti-USP10 (ab109219, Abcam) and Anti-RFC2 (ab174271, Abcam).
+ Open protocol
+ Expand
4

Immunohistochemical Analysis of USP10 and YAP1

Check if the same lab product or an alternative is used in the 5 most similar protocols
Fresh frozen OS tissue and adjacent tissue specimens were fixed using 4% paraformaldehyde, then immersed in paraffin, sectioned to the thickness of 3 μm, degreased, and hydrated. The tissues were incubated overnight with antibodies against USP10 (Abcam, ab109219, 1:100 dilution) and YAP1 (Abcam, ab52771, 1:200 dilution) at 4°C. The sections were then incubated with the corresponding secondary antibodies for 1 h at room temperature, followed by microscopic observation. The staining intensity and the percentage of positive cells were scored blindly, randomly, and semi‐quantitatively. The total staining index was calculated by the score and score multiplied by 0–9 points, and the final score was USP10 non‐overexpression (0–1) or USP10 overexpression (2–9).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!