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Quant it ribogreen rna

Manufactured by Thermo Fisher Scientific
Sourced in United States

The Quant-iT RiboGreen RNA assay is a fluorescence-based method for quantifying RNA in solution. It utilizes a sensitive RNA-binding dye that emits fluorescence upon binding to RNA, allowing for the accurate measurement of RNA concentrations.

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3 protocols using quant it ribogreen rna

1

Lipid Nanoparticle Encapsulation of RNA

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RNA was packaged into LNPs using a NanoAssemblr microfluidic system (Precision Nanosystems) according to the manufacturer’s instruction. Briefly, LNP formulations were prepared by injecting 12.5 mM lipid solution and 0.173 μg/μL RNA in formulation buffer at a flow rate of 12 mL/min. LNP suspension was immediately diluted in phosphate-buffered saline (PBS) (cat#21-040-CM, Corning) followed by reconcentration of formulation by centrifuging at 2,000 × g in Amicon filters (30,000 MWCO, Amicon Ultra-15 Centrifugal filter unit cat# Z717185, Millipore Sigma). The LNP suspension was filtered through a 0.22μm syringe filter, and LNPs were stored at 4 °C until use. Free and total RNA concentrations were determined by Ribogreen assay (Quant-iT RiboGreen RNA, cat# R11490, Invitrogen). LNPs were lysed for 10 min at 37 °C in 1% Triton X-100 to obtain total RNA concentration. Encapsulated RNA was calculated as (([total RNA] − [free RNA])/[total RNA] × 100). The size of LNPs was characterized by dynamic light scattering in a DynaPro NanoStar Instrument (Wyatt Technology) and analyzed with Dynamics 8.0 software (Wyatt Technology). The LNPs were used within 5 days of making them.
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2

Optimized RNA Encapsulation in Lipid Nanoparticles

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RNA was packaged into LNPs using a NanoAssemblr microfluidic system (Precision Nanosystems, Vancouver, Canada) according to manufacturer instructions. Briefly, LNP formulations were formed by injecting 12.5 mM of the lipid solution and 0.173 μg/μl of RNA in formulation buffer at a flow rate of 12 ml/min. After mixing, LNP suspension was immediately diluted in PBS (Corning, Manassas, USA). Then, the formulation was reconcentrated by centrifugation at 2000 g in Amicon filters (30,000 MWCO, Amicon Ultra-15 Centrifugal Filter Unit, Millipore Sigma, Burlington, USA). Finally, the LNP suspension was filtered using a 0.22 micron syringe filter and kept at 4°C until use. Free and total RNA concentration were determined by Ribogreen assay (Quant-iT RiboGreen RNA, Invitrogen, Carlsbad, USA). For obtaining total RNA concentration, LNPs were lysed for 30 min at 37°C in Triton X-100 1%. Encapsulation was calculated as (total RNA-Free RNA)/(total RNA x 100). Particle sizes were measured by Dynamic Light Scattering in a DynaPro NanoStar instrument (Wyatt Technology, Santa Barbara, USA) and analyzed with Dynamics 8.0 software (Wyatt Technology, Santa Barbara, USA). Samples were diluted in PBS (Corning, Manassas, USA) until full laser power could be used to record the signal. For each sample, 3 measurements were conducted, each consisting of 10 recordings of 10 s.
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3

Characterization of Lipid Nanoparticle Formulations

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The hydrodynamic diameter, polydispersity index (PDI), and zeta potential of LNPs were measured using a Zetasizer Nano ZS90 (Malvern Instruments, Malvern, UK). The morphology of LNPs were characterized by transmission electron microscopy (JEOL 1010, Tokyo, Japan). The siRNA–LNP complex was analyzed by agarose gel electrophoresis48 (link). siRNA encapsulation efficiency was determined using a modified Quant-iT RiboGreen RNA assay (Invitrogen)47 . The pKa of LNP was determined using a 6-(p-toluidinyl)naphthalene-2-sulfonic acid (TNS) assay49 (link).
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