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Non targeting sirna 2

Manufactured by Horizon Discovery

Non-targeting siRNA #2 is a synthetic double-stranded RNA molecule designed for use as a control in RNA interference (RNAi) experiments. It does not target any known gene in mammalian cells, making it suitable for comparing the effects of specific gene silencing to a non-targeting control.

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4 protocols using non targeting sirna 2

1

Regulation of C/EBPβ Expression in MIN-6 Cells

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MIN-6 cells were maintained in Dulbecco’s modified Eagle's medium supplemented with 15% heat-inactivated fetal bovine serum and 1% penicillin/streptomycin. For overexpression of C/EBPβ, MIN-6 cells were transfected with expression plasmid carrying the full C/EBPβ by using Lipofectamine 3000 (Invitrogen) transfection reagent. For knockdown of AMPK, MIN-6 cells were re-plated in 12-well plates (60-mm dishes) at 24 h before transfection and transfected with siRNA for AMPKα1 and α2 (SMARTpool; Dharmacon, Lafayette, CO) or scramble controls (Non-Targeting siRNA#2; Dharmacon) with DharmaFECT2 transfection reagent (Dharmacon). After 48 h of further incubation for 48 h for protein, cells were harvested for evaluation of C/EBPβ expression.
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2

Optimizing siRNA knockdown efficiency

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ON-TARGETplus PFKFB2 siRNA #6, 7, 8 and 9, TP53 siRNA #14, 15 and 16, SMARTpool G6PD siRNA and Non-targeting siRNA #2 were purchased from Dharmacon (Lafayette, CO). 30 nM of siRNA and 1.5‰ DharmaFECT 4 (Dharmacon, Lafayette, CO) were diluted in OPTI-MEM medium individually and then mixed together for 20 min at room temperature. Cells were laid on top of siRNA-DharmaFECT mixture in 6-well plates and incubated for 24, 48 or 72 hrs before analyses. We validated all siRNA oligos in multiple cell lines and discovered the knockdown efficiency of siPFKFB2 #6 and #7 is better than #8 and 9, and siTP53 #14 is better than #15 and 16.
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3

Silencing DCAF1 in HEK293T Cells

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siRNA targeting DCAF1 (siRNA bp3 from the siGENOME SMARTpool, M-021119-03 with the 5′-UCACAGAGUAUCUUAGAGA-3′ sequence targeting the DCAF1 mRNA ORF region 3148-3166) and non-targeting control siRNA (non-targeting siRNA #2) were obtained from Dharmacon. For transfection of HEK293T cells, 80 pmol of siRNA and plasmid DNA constructs encoding HA-tagged Vpr (50 ng) and DCAF1 (250 ng) were preincubated with 4.5 µl of lipofectamine 2000 and overlayed on cells at 50% confluency (final concentration of siRNA was 40 nM). To mark transfected cells, 1 µg of GFP-expressing plasmid (pQBI-25) was usually co-transfected in these experiments. All analyses were conducted at 48 h post-transfection.
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4

siRNA Transfection and Cell Analysis

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siRNAs (Supplementary Table S1) were transfected with Lipofectamine RNAiMax reagent (Life Technologies), according to the manufacturer's instructions, using the concentrations indicated in the Figures. The non-targeting siRNA #2 (Dharmacon) was used as a control as described previously [67 ]. 72 hours after transfection, cells were prepared for total RNA and protein extractions, and cell cycle analyses.
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