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Lipofectamine rnai reagent

Manufactured by Thermo Fisher Scientific
Sourced in United States

Lipofectamine RNAi reagent is a cationic lipid-based transfection reagent used for the delivery of small interfering RNA (siRNA) and short hairpin RNA (shRNA) into eukaryotic cells. It facilitates the uptake of these RNA molecules into the cells, enabling efficient gene silencing through RNA interference (RNAi) mechanisms.

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6 protocols using lipofectamine rnai reagent

1

GATA3 Knockdown Using siRNA

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Cells were transfected with GATA3 siRNA using Lipofectamine RNAi reagent (Thermo Fisher Scientific). The sequences of GATA3 siRNA were: siRNA-1: 5′-GGCUCUACUACAAGCUUCACAAUAU-3′ and siRNA-2: 5′-CCACACUCUGGAGGAGGAAUGCCAA-3′.22 (link)
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2

Isolation and Cultivation of Bone Marrow-Derived Macrophages

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Femurs were flushed out with PBS using a sterile needle, and BMDM cells were cultivated in DMEM medium (Life Technologies, Carlsbad, CA, USA) containing L929 conditioned media. After 5 days, BMDMs cells were then incubated at 37°C in DMEM medium supplemented with 10% FBS and 1% penicillin/streptomycin solution (Trouplin et al., 2013 ). Orai1 and TRPC1 adenovirus was purchased from AbmGood (Richmond, BC, Canada), and was amplified in HEK 293 using the manufacture's protocol. For overexpression experiments, 5 MOI of the virus encoding Orai1 or TRPC1 was added to 75% confluent cells. For silencing experiments respective Orai1siRNA (ThermoFisher, Assay ID: s99509) and TRPC1siRNA (ThermoFisher, Assay ID:104,443) was used, and the transfection was performed with Lipofectamine RNAi Reagent following the manufacture's protocol. Cells were seeded to be 70% confluent, and the Lipofectamine 2000 reagent was diluted in an optimal concentration (ThermoFisher, LMRNA015, 25 pmol per well in a 6-well dish) in Opti-MeM medium (Gibco, Dublin, Ireland). We added the lipofectamine to the diluted siRNA in a 1:1 ratio and incubated for 5 min at room temperature, after the stipulated time the complex was layered on the cells for 5 h followed by adding fresh media before using for individual experiments.
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3

Atg7 Knockdown and GL Treatment

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Atg7 siRNA was used to inhibit Atg7 expression. Transfection was conducted using Lipofectamine RNAi reagent (Life Technologies) according to the manufacturer's instructions. A scrambled siRNA was transfected as the negative control. After transfection for 48 h, HCC cells were treated with GL for further analysis.
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4

FOXO3a Expression Inhibition Protocol

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To inhibit FOXO3a expression, small interfering RNA (siRNA) was synthesized (Bioneer). The siFOXO3a-518 target sequence was 5′–GACAAACGGCUCACUCUGU-3′, the siFOXO3a-1774 target sequence was 5′-CUCAACGAGUGCGAACCUU-3′, and the siFOXO3a-1895 target sequence was 5′-GAUGCUGACGGGUUGGAUU-3′. Lipofectamine RNAi Reagent was used to transfect siRNA according to the manufacturer’s instructions (Life Technologies, Carlsbad, CA, USA). The IPEC-J2 Cells were incubated for 24 h after siRNA and DON treatments.
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5

Transfection of HeLa H2B-GFP Cells

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HeLa cells stably transfected with GFP fused to Histone 2B (HeLa H2B-GFP) were used in this study. HeLa cell lines were grown in culture flasks or chambered coverslips in DMEM-based media with 10% FBS supplemented with penicillin and streptomycin in 5% CO2 at 37°C. Cell lines were routinely tested for mycoplasma contamination and only used if not contaminated.
Transient transfection of siRNA was done using Lipofectamine RNAi reagent (Invitrogen) according to manufacturer's instructions. siRNA against PP2A Aα (CACAGAGAAAUAAAGGUCU and ACAACGUCAAGAGUGAGAU), PP1γ (CGAGUGACCGAUUAUGCUU and GUCUGAGGAGUAAGUGUAC) were obtained from Bioneer Inc. (Almeda, CA, USA) and these were used at 50-100 nM final concentration. siRNA against Ska3 was obtained from Dharmacon (Lafayette, CO, USA) and used at 50 nM final concentration (Daum et al., 2009 (link)).
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6

Aortic Tube Formation Assay

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Aortic ring assay was conducted as the following: aortae from ten male wild-type 6–8-week-old mice were removed, cleaned, and embedded in a collagen type I gel (BD Biosciences, Heidelberg, Germany) in a 48-well plate containing EBM medium supplemented with murine orthologous serum (2%). For Mthfd2 knockdown, scrambled control siRNA (Ambion) and Mthfd2 siRNA (Sigma-Aldrich) in a final concentration of 100 µM were added in the growth media for 24 h by use of the Lipofectamine RNAi reagent (Invitrogen). Glycine treatment was performed in 500 µM final concentration every 48 h. Tube-like structures were allowed to develop over 5 days. Thereafter, the samples were fixed (4% paraformaldehyde) and endothelial cells were visualized using antibody against Pcam1. The knockdown was evaluated by immunostaining against Mthfd2.
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