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8 protocols using anti cd107a bv421

1

Characterizing Activated T-Cell Subsets

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Cells were labeled with fluorochrome-conjugated antibodies, anti-CD3 APC-R700, anti-CD4 BV711, anti-CD8 BV786, anti-CD56 BV510, and anti-CD19 APC and with fixable viability stain eF780 (all BD). Anti-CD107a BV421 (BioLegend) was added during culture. For intracellular staining, cells were fixed, permeabilized, and stained with phycoerythrin-conjugated anti-CD137 and allophycocyanin-conjugated anti-IFN-γ (BD) using the Foxp3/transcription factor staining buffer set (eBioscience) according to the manufacturer’s protocol. Cells were acquired on an LSRFortessa X20 flow cytometer (BD). Data were analyzed using FlowJo (v10; Tree Star). The results are expressed as the percentage of CD137+ or CD107a+ cells in the CD3+ CD4+ live gate.
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2

Antibodies for Cellular Immunoassays

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The following antibodies were used for cellular assays: anti-HLA-ABC-APC (clone W6/32, eBioscience), anti-CD3-BU737 (clone UCHT1, BD Bioscience), anti-CD3-PerCyP.5.5 (clone UCHT1, BioLegend), anti-CD19-BV510 (clone HIB19, BioLegend), anti-CD56-BU395 (clone NCAM16.2, BD Bioscience), anti-CD16-BV785 (clone 3G8, BioLegend), anti-KIR2DL1/S1/L3/S3/L5/S5-PE (clone HP-MA4, eBioscience), anti-KIR2DL1/S1-PE (clone 11PB6, Miltenyi), anti-KIR2DL1-FITC (clone REA284, Miltenyi), anti-KIR2DL3-APC (clone DX27, Miltenyi), anti-KIR3DL1/S1-BV421 (clone DX9, BioLegend), anti-NKG2A-PE-Cy7 (clone Z199, Beckman), anti-NKG2D-APC (clone 1D11, BioLegend), goat anti-human IgG(Fc) F(ab´)-PE (Life Technologies), anti-CD69-BV421 (clone FN50, BioLegend), anti-CD107a-BV421 (clone M4A3, BioLegend). For blocking assays we pre-incubated the samples with anti-HLA-C antibodies (clone 6A4, IgM, kindly provided by Prof. L. Moretta, Istituto Giannina, Genova, Italia) diluted 1/20 for 20 min at 37 °C.
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3

Flow Cytometric Analysis of Cell Degranulation

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For the detection of degranulation, cells were stimulated for 4 h with PBDu and ionomycin in the presence of an anti-CD107a-BV421 (Biolegend, clone 1D4B, 121617) antibody. Next, cells were stained with anti-CD107a-PE-Cy7 (Biolegend, clone 1D4B, 121619) and other surface antibodies, followed by intracellular granzyme B and perforin staining, by using the intracellular fixation buffer (Biolegend, 420801) and permeabilization buffer (Biolegend, 421002) as per manufacturer instructions.
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4

Multiparametric Immune Cell Profiling

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Epitope-specific cell lines were stained with anti-CD3, anti-CD4, anti-CD8, anti-CD45RO and anti-CCR7 for 15 min at 4 °C. Anti-CD107a-BV421 (328,626, BioLegend) was added during culture. For intracellular staining, cells were fixed, permeabilized, and stained with anti-CD137-PE (555,956, BD), anti-IFN-γ and anti-TNF using the Foxp3/transcription factor staining buffer set. Cells were acquired on an LSRFortessaX20.
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5

Cytotoxic T Cell Activation Assay

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Clone cells were washed and left in fresh RPMI 1640 CM (5% AB serum) without IL-2 to rest for 5 hours or overnight before being stimulated with RL9 peptide pulsed K562-E (50μM, 20-24 hours at 27°C), K562-E-RL9 or K562-D-RL9 cells at a clone: K562 cell ratio of 1:3 for 1 hour, followed by addition of 5μg/ml Brefeldin A (Biolegend) and 5μg/ml GolgiStop (BD Biosciences) for an additional 8 hours at 37°C. For CD107 staining, anti-CD107a-BV421 and anti-CD107b-BV421 (Biolegend) antibodies were added at the beginning of the co-culture. After 9 hours incubation, cells were washed with PBS and stained with Live/Dead Fixable Aqua, anti-CD8-PerCP-Cy5.5 and anti-CD3-APC-Cy7 for 30 min at RT first, then fixed/permeabilized with Cytofix/Cytoperm 1x Solution (BD Biosciences) for 10 min at 4°C, and stained in Permwash 1x Solution (BD Biosciences) with anti-TNFα-PE, anti-IFN-γ–FITC and anti-CD137-BV650 (All BioLegend) for 30 min at RT. After being washed with PBS and fixed with 2% paraformaldehyde, samples were acquired using an LSR Fortessa (BD Biosciences) and analyzed using FlowJo software v10.3 (Tree Star). In the selected assays to determine HLA-E restriction, K562-E cells were pre-incubated with the VL9 canonical signal peptide (VMAPRTLVL, 50μM, 3 hours at 27°C) prior to addition of RL9 peptide.
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6

Cytotoxic Activity Assay for Immune Cells

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Intestinal isolated monocuclear cells were resuspended in IMDM with 10% FBS, and either left unstimulated, stimulated with phorbol 12-myristate 13-acetate (PMA) (Sigma-Aldrich), and ionomycin (SantaCruz Biotechnology), K562 or 772.221 target cells (Effector/Target cell-ratio: 1:5), in the presence of Brefeldin A (Sigma Aldrich), Monensin (BD), and anti-CD107a-BV421 (BioLegend) for 6 h at 37 °C and 5% CO2. The K562 cell line was obtained from the Leibniz institute DSMZ-German Collection of microorganisms and cell cultures. The 772.221 cell line was obtained from America Type Culture Collection (ATCC). Cells were intracellularly stained for cytokines and analyzed as described above. Values of response parameters (CD107a, IFN-ɣ, and TNF-α positive cells) from stimulated conditions were corrected with corresponding values of unstimulated conditions: Relativevalue=percentagestim.cells-percentageunstim.cells*100100-percentageunstim.cells
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7

Multiparametric Analysis of T-Cell Functionality

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Cytotoxicity, activation, degranulation, and proliferation of T cells, and cytokine secretion were analyzed in multiparametric cytotoxicity assays. Cell lysis was assessed by quantification of lactate dehydrogenase concentrations in the cell culture supernatant using the Cytotoxicity Detection KitPLUS (Sigma-Aldrich) according to manufacturer's instructions. Activation and degranulation of T cells were assessed by staining cells for extracellular CD25 (anti-CD25-APC, Becton Dickinson, RRID:AB_2916552), CD69 (anti-CD69-PE-Cy7, Becton Dickinson, RRID:AB_396851), and CD107a (anti-CD107a-BV421, BioLegend, RRID:AB_11203537), and intracellular granzyme B (anti-GrzB-FITC, Becton Dickinson, RRID:AB_1645488) by flow cytometry. For analysis of T-cell proliferation, the PBMCs were labeled with CFDA-SE (Becton Dickinson) and T cells were additionally stained with anti-CD3 (BioLegend, RRID:AB_2561628). Cytokine concentrations were analyzed from supernatants of cytotoxicity assays using the V-PLEX Assays (Mesoscale Discovery) following the manufacturer's instructions.
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8

Profiling CD8+ T cell Activation Markers

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PBMCs were stimulated with anti-CD3/CD28 (5 µg/mL, Ebioscience) for 5 h in the presence of anti-CD107a BV421 (BioLegend) and Golgiplug (BD Biosciences). CD107a expression was measured as a marker of degranulation on CD8+ T cells after stimulation. The cells were surface-stained with CD3-BV786, CD4-APC-Fire750, CD8-BV421, CD244-PE-D594, CD160-AF488, and intracellularly stained with TNF-α-BV711, IL-2-BV650 (BioLegend), or IFN-γ-AF700 (Ebioscience) antibodies. For Ki67, perforin, Granzyme B, T-bet, or Eomes staining, PBMCs were surface-stained with CD3-BV786, CD4-APC-Fire750, CD8-BV421, CD244-PE-D594, CD160-AF488, and intracellularly stained with Granzyme B-AF700, T-bet-BV421 (BD Biosciences), Ki67-BV711, perforin-APC (BioLegend), or Eomes-PE-CY7 (Ebioscience) antibodies. A fixable viability dye eFluor® 506 (Ebioscience) was used to label dead cells.
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