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Tripure isolation reagent

Manufactured by BioTeke
Sourced in China

TRIpure isolation reagent is a ready-to-use reagent for the isolation of total RNA, DNA, and proteins from a variety of biological samples. It is based on the single-step method of RNA isolation developed by Chomczynski and Sacchi.

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5 protocols using tripure isolation reagent

1

qRT-PCR Analysis of Gene Expression

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Total RNA was extracted from cells using TRIpure isolation reagent (BioTeke, Beijing, China). qRT-PCR analysis was performed as previously described [28 (link)]. Briefly, first-strand cDNA was synthesized from total RNA using cDNA synthesis kit (BioTeke). Then, real-time PCR was performed using the SYBR Green kit (Solarbio) and detected by Exicycler TM 96 (Bioneer, Daejeon, Korea). GAPDH was acted as internal control. The primer sequences were synthesized by GenScript Biotechnology (Nanjing, China) and listed as the following: MAPK p38 forward, TAAAGCCCAGCAACCTCG, reverse, CAGCCCACGGACCAAATA; PPARγ forward, TACCACGGTTGATTTCTC, reverse, AATAATAAGGCGGGGACG; CTGF forward, GTCTTCGGTGGGTCCGTGTA, reverse, GCGGTCCTTGGGCTCATCAC; CyclinD1 forward, GAGGAGCAGAAGTGCGAAGA, reverse, GGCGGATAGAGTTGTCAGTGTAG; caspase-3 forward, GACGACAGGGTGCTACGAT, reverse, TTTCCTTACGCTCTGACTGA; β-actin forward, GGAGATTACTGCCCTGGCTCCTAGC, reverse, GGCGGACTCATCGTACTCCTGCTT. The reaction was conducted with an initial denaturing step at 94°C for 5 min, followed by 40 cycles of 94°C for 10 s, 60°C for 20 s, and 72°C for 30 s. The relative expression was analyzed by the 2-ΔΔCt method.
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2

Quantitative Real-Time RT-PCR of Osteogenic Genes

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Total RNAs were isolated with TriPure isolation reagent (Bioteke, Beijing, China), and processed into cDNAs via Super M-MLV reverse transcriptase (Bioteke). PCR products were analyzed in agarose gel (1.5%) electrophoresis. The relative gene expression levels were determined by real-time RT-PCR. In short, cDNA templates were mixed with primers (Genscript, Nanjing, China), Sybr Green (Sigma-Aldrich, St. Louis, MO, USA) and 2 × Power Taq PCR MasterMix (Bioteke), and analyzed on an Exicycler™ 96 PCR instrument. Housekeeping gene GAPDH was used as a reference. Primer information was as following: CNR2–F 5′–agccctcatacctgttcattgg–3′; CNR2–R 5′–gtgaaggtcatagtcacgctg–3′; osteopontin–F, 5′–gaagtttcgcagacctgacat–3′, osteopontin–R 5′–gtatgcaccattcaactcctcg–3; osteocalcin–F, 5′ –cactcctcgccctattggc–3′, osteocalcin–R, 5′–ccctcctgcttggacacaaag–3′. Data from real-time PCR results were calculated via the 2−ΔΔCt method.
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3

Quantification of Apoptosis Regulators

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The relative expression levels of JNK1, JNK2, c-jun, Bax, and Bcl-2 were determined by RT-PCR assay. Total RNA was extracted with TRIpure isolation reagent (RP1001; BioTeke, Beijing, China). The concentrations of RNA in each sample were determined using an ultraviolet spectrophotometer NANO 2000. cDNA synthesis was performed using Super M-MLV reverse transcriptase (PR6502; BioTeke, Beijing, China). Differential RT-PCR was conducted on ExicyclerTM 96 (BIONEER, Korea). An endogenous reference gene β-actin was used as an internal reference. The relative levels of target genes were measured using the 2−ΔΔCt method. Each experiment was performed in triplicate. Primer sequences are summarized in Table 1.
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4

Quantitative RT-PCR Analysis of MFN2 Gene

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Referring to the manufacturer's instructions, total RNA from lens and HLE-B3 cells was extracted using TRIpure Isolation Reagent (BioTeke, Wuxi, Jiangsu, China) and complementary DNA (cDNA) was generated using BeyoRT II M-MLV reverse transcriptase. Then RT-qPCR reaction was done via SYBR Green PCR Master Mix (Solarbio). The cycling parameters were 95.00℃ for 5 min and 40 cycles of 95.00℃ for 10 s, 60.00℃ for 10 s, 72.00℃ for 15 s, followed by 72.00℃ for 90 s, 40.00℃ for 60 s, melting 60℃ to 94℃ with a 1.0℃ increase every 1 s, and 25.00℃ for 1-2 min. The primer sequences used were: rat MFN2 forward, 5'-GCCGTCCGTCTCATCAT-3' and reverse, 5'-GGCGGTGCAGTTCATTC-3'; homo MFN2 forward, 5'-CGCAGAAGGCTTTCAAGT-3' and reverse, 5'-ACGCATTTCCTCGCAGTA-3'. The Ct values were recorded and the relative abundance of the products was estimated using the 2 -ΔΔCt method [20] (link).
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5

Quantification of RNA Expression Levels

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Total RNA was extracted from BC cells with TriPure Isolation Reagent (BioTeke Corporation) and the concentration was determined using a NanoDrop 2000 UV spectrophotometer (Thermo Fisher Scientific, Inc.). Next, cDNA was obtained via reverse transcription using Super M-MLV Reverse Transcriptase (BioTeke Corporation), dNTPs (Beijing Solarbio Science & Technology Co., Ltd.) and RNase inhibitor (BioTeke Corporation). Finally, using the cDNA template, primers, SYBR Green (Millipore Sigma) and 2X Power Taq PCR MasterMix (BioTeke Corporation), qPCR was performed and the relative mRNA expression level was calculated using the 2−ΔΔCq method (21 (link)). The thermocycling conditions for qPCR were as follows: For miRNA, 94°C for 4 min, followed by 40 cycles of 94°C for 15 sec, 60°C for 20 sec and 72°C for 15 sec; and for mRNA, 94°C for 5 min, followed by 40 cycles of 94°C for 15 sec, 60°C for 25 sec and 72°C for 30 sec. miRNA and mRNA expression levels were normalized to ribosomal 5S RNA and β-actin, respectively. The primers used for qPCR are presented in Table II.
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