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94 protocols using photomicroscope

1

Histopathological Analysis of Inflammatory Tissue

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At the end of the studies animals were sacrificed while they were under isoflurane (5% in 100% oxygen) anaesthesia. For histological examination, paw tissues were taken 6 h after edema was induced by carrageenan. The tissue slices were immediately fixed in freshly prepared 10% neutral buffered formalin for a minimum of 24 h. On the other hand, specimens of the gastric walls from each rat were kept in 10% buffered formalin for 24 h for histopathological examination following the assessment of ulcer score for anti-ulcer activity. Then the tissue specimens were processed for paraffin embedding tissue sections. The samples were sectioned with a microtome, stained with hematoxyline and Eosin (H and E) and mounted on Canada balsam. All sections were examined under light microscope. Photographs of the lesions were taken with an Olympus photo microscope for observation and documentation of histopathological changes such as oedema, inflammation, infiltration and erosion.
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2

Microscopic Observation of Bacillus thuringiensis

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For observations of the number of fluorescent cells under phase-contrast and fluorescence microscopy, all B. thuringiensis strains were cultivated in LB liquid medium at 28°C. The morphology of the strains was observed with an Olympus photomicroscope (Tokyo, Japan).
To observe the production of parasporal crystals under phase-contrast microscopy, all strains were sporulated using a previously described method [37 (link)]. Briefly, strains were cultured in ICPM liquid medium (0.6 % peptone, 0.5 % glucose, 0.1 % CaCO3, 0.05 % MgSO4, and 0.05 % KH2PO4 (pH 7.0)) for 36 h at 28°C. The spores and crystals were collected and washed three times with 1 M NaCl solution and three times with water [37 (link)]. These samples were also used to detect crystal protein expression by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE). Under phase-contrast microscopy, spores are phase-bright, and crystals are phase-dark [35 (link)]. For scanning electron microscopy with a Quanta200 (FEI, Hillsboro, OR, USA), the lysed cell samples were treated following the methods described by Shao et al. [37 (link)].
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3

Immunohistochemistry on Fixed Lung Tissue

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Excised lungs were fixed with 4% formaldehyde for 48h, and embedded in paraffin for slide preparation. Before staining, 5-μm slides were dewaxed by xylene and rehydrated by a graded series of ethanol. The sections were stained by hematoxylin and eosin (HE) to evaluate pathogenesis. The procedure of IHC was described in the previous study [40 (link), 41 (link)]. Ten % BSA-blocked slides were incubated with the primary antibody targeting IL10 (Bioss Inc., Woburn, MA, USA), CD163 (abcam®, Cambridge, MA, USA), EGFR (Cell Signaling Technology, Beverly, MA, USA) and p-Src (Y419; GeneTex, Inc., Irvine, CA, USA) for 1h, at room temperature. Subsequent procedures were performed using Vectastain ABC kit (Vector Laboratories, Burlingame, CA) according to the instruction, and photographed by photomicroscope (Olympus, Melville, NY, USA).
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4

Immunohistochemical Analysis of Kidney Sections

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Paraffin-embedded Kidney sections (5 μm thick) were deparaffinised and boiled for 10 min in sodium citrate buffer (10 mM, pH 6.0). The sections were depleted of endogenous peroxidase activity by adding methanolic H2O2 for 10 min and blocked with normal serum for 30 min. After overnight incubation at 4°C with polyclonal antibodies against CD68 (Abcam, USA) or pSTAT3 (CST, USA), the samples were incubated for 30 min with the secondary antibody, biotinylated anti-rabbit IgG (CD68), or biotinylated anti-mouse IgG(pSTAT3), and incubated with streptavidin–peroxidase complex (Vector) for 1 h, followed by incubation with 3,3’-diaminobenzidine (Dako) for 5 min. The sections were counterstained with haematoxylin. The samples were photographed using an Olympus photomicroscope.
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5

Benzimidazole Derivatives' Impact on Cell Migration

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MDA-MB-231 and RT-R-MDA-MB-231 cells were cultured in 6-well plates and scratched with a sterile 200-μL pipette tip. The cells were then treated with four benzimidazole derivatives (ALB, FLU, FBZ, and MBZ) at the indicated concentrations (0.1, 0.5, and 1 μM). After 42 h, the cells were washed with PBS, and images were taken using an Olympus photomicroscope. The number of cells that migrated to the scratched area was counted.
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6

Immunohistochemical Analysis of Kidney Markers

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Paraffin-embedded kidney sections were deparaffinised and incubated with primary antibodies against collagen IV (dilution 1:1000, Abcam Ltd, Cambridge, USA), fibronectin (dilution 1:500, Abcam), or 8-hydroxy-2'–deoxyguanosine (8-OHdg) (dilution 1:200, Cell Signaling Technology, Beverly, USA) at 4°C overnight, followed by horseradish peroxidase anti-rabbit Envision system (Dako Tokyo, Japan) the following day.
Alternatively, frozen sections were incubated in the widely used markers of murine macrophage populations, rat anti-mouse F4/80 monoclonal antibody (dilution 1:100, ABD Serotec, USA) or rat anti-mouse CD68 antibody (dilution 1:100, ABD Serotec) for one hour. Thereafter, they were incubated with a secondary HRP labelled goat anti-rat antibody for 30 min (ABD Serotec, dilution 1:200).
Antigen-antibody reactions were visualized with 3.3diaminobenzidine tetrahydrochloride (Dako) and counterstained. The tissue specimens were examined by light microscopy using the Olympus photomicroscope. For fibronectin, collagen IV, 8-OHdg, CD68, and F4/80, six consecutive non-overlapping fields from each section of renal cortex were photographed under high magnification. Stained areas were quantified using Image J software (NIH, UK).
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7

Immunohistochemical Analysis of Cytokine Expression

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Joint tissue was first incubated with primary antibodies against tumor necrosis factor-α, IL-1β (R&D Systems, Minneapolis, MN, USA),, IL-6(R&D Systems),, and IL-17 (R&D Systems) overnight at 4 °C. Samples were incubated with a biotinylated secondary antibody, followed by incubation with a streptavidin–peroxidase complex for 1 h. Samples were then developed using chromogen 3,3′-diaminobenzidine (Thermo Scientific, Rockford, IL,USA). The sections were examined under a photomicroscope (Olympus, Tokyo, Japan). The number of positive cells was counted using Adobe Photoshop software (Adobe, USA) on high-power digital image (magnification: 400). Positive cells were enumerated visually by three individuals, and the mean values were calculated.
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8

Scratch Wound Healing Assay

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The cells were grown in 6 well plates to 100% confluent monolayer and then scratched with 1 mL sterile pipette tip to form a “wound”. After the wound formation, the cells were incubated in serum-free media for 0, 18, and 24 h at 37 °C in a CO2 incubator. The scratch was viewed using an Olympus photomicroscope.
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9

Wound Healing Migration Assay

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The wound healing assay process was described previously.15 Briefly, the cells were cultured to 90% confluence, wounded by 200 μL pipette tip, washed with PBS and supplemented with a fresh medium with 1% FBS containing 2 μg/mL mitomycin C. The cell migration into the wounded area was photographed at different time points using 10 × objectives in an Olympus photomicroscope. The wound healing migration area was measured and analyzed using an Image‐Pro plus 6.0. All the experiments were performed in triplicate.
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10

Cell Migration Assay for Old and Young NPCs

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Young and old NPCs were seeded in 6-well plates at a concentration of 1 × 105 cells/ml. After growing to 100% confluence, parallel scratches were made at the bottom of the 6-well plate with a 200 ml pipet tip. The suspended cells were washed off with serum-free medium, and the width of the scratches was observed and pictured at 0 h and 24 h under an Olympus photomicroscope. The migration of the cells was determined by measuring the distance between the wound edges using ImageJ software. Three different areas were measured for each group, and the average distance was calculated for analysis.
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