The largest database of trusted experimental protocols

94 protocols using dextrose

1

Media Preparation for Filamentous Fungi

Check if the same lab product or an alternative is used in the 5 most similar protocols
All the chemicals used in this study were obtained from Sigma-Aldrich, MO, USA unless specified. Media used for the study was the standard media that has been used previously to study different phenomena in filamentous fungi42 –44 (link). The media used was MAG (2% malt extract, 0.2% peptone (BD-Difco, NJ, USA), 1% dextrose (Fisher Scientific, MA, USA), 0.01% vitamin mix and trace elements)42 , YGV (0.5% yeast extract (Fisher Scientific, MA, USA), 2% dextrose, 0.01% vitamin mix and trace elements), CM (1% dextrose, 0.2% peptone, 0.1% yeast extract, 0.1% casamino acids, 0.01% vitamin mix, nitrate salts, and trace elements) or MM (1% carbon source (glucose or starch or carboxymethyl cellulose (CMC)), nitrate salts, 0.01% vitamin mix and trace elements). When necessary, 2% agar was added to solidify media. Details vitamin mix, trace elements mix and nitrate salts are described in Supplementary Tables S1S3 respectively. The strains used in this study are FGSC A28 (pabaA6 biA1; obtained from the Fungal Genetics Stock Center (Manhattan, KS) and ASH83 (pabaA6 podB1 pyroA4; Harris et al., 1999).
+ Open protocol
+ Expand
2

Yeast Cell Culture Media Compositions

Check if the same lab product or an alternative is used in the 5 most similar protocols
Standard culture media were used [50 ]. The YPD medium consists of 1% yeast extract (Becton, Dickson, and Co., Sparks, MD), 2% Peptone (Becton, Dickson, and Co.), and 2% dextrose (Fisher Scientific, Fair Lawn, NJ). The synthetic complete (SC) medium consists of 0.67% yeast nitrogen base without amino acids (Becton, Dickson, and Co.), 0.0086% of each of the 20 amino acids except 0.0171% leucine (Fisher Scientific), 0.0021% adenine (Fisher Scientific), 0.0009% 4-aminobenzoic acid (Fisher Scientific), 0.0086% uracil (Sigma, St. Louis, MO), 0.0086% myo-inositol (Sigma), and 2% dextrose (Fisher Scientific). The SC-Dropout medium is the same as SC, except that specific amino acid(s) were omitted. The YM-1, a buffered rich liquid medium [51 (link)], consists of 0.5% yeast extract (Becton, Dickson, and Co.), 1% Peptone (Becton, Dickson, and Co.), 0.7% yeast nitrogen base without amino acids (Becton, Dickson, and Co.), 0.6% sodium hydroxide (Fisher Scientific), 1% succinic acid (Fisher Scientific), and 2% dextrose (Fisher Scientific). All yeast strains were grown at 25°C, unless otherwise indicated.
+ Open protocol
+ Expand
3

Yeast Strain Construction and Growth

Check if the same lab product or an alternative is used in the 5 most similar protocols
The S. cerevisiae strain BY4741 (MATa; his3Δ1; leu2Δ0; met15Δ0; ura3Δ0) was used for gene expression of the mono-and polycistronic constructs. The MVA pathway genes, tHMG1, and IDI1 were amplified from the genome of the strain CEN.PK2-1C (MATa his3D1 leu2-3,112 ura3-52 trp1-289 MAL2-8C SUC2). Chemically competent Escherichia coli (E. coli) DH5α strain was used to propagate plasmids. Transformed E. coli cells were selected on the Luria-Bertani plate (LB) with appropriate antibiotics. The wildtype E. coli strain MG1655 was used to amplify the LacZ gene. Synthetic dropout media contained 0.67% (w/v) yeast nitrogen base without amino acids (Difco, Franklin Lakes, NJ), 0.1% (w/v) dextrose (Fisher Scientific, Waltham, MA), 2% (w/v) raffinose (Goldbio, St. Louis, MO), 0.07% (w/v) synthetic complete amino acid mix minus histidine (Sunrise Science, Knoxville, TN). Galactose induction media had the same composition, except the 0.1% (w/v) dextrose was replaced with 2% Galactose (Fisher Scientific, Waltham, MA). Yeast extract peptone dextrose (YPD) media for preparing yeast competent cells contained 1% (w/v) Bacto TM yeast extract, 2% (w/v) Bacto TM peptone, and 2% (w/v) dextrose.
+ Open protocol
+ Expand
4

Conditioned Media Effects on Breast Cancer

Check if the same lab product or an alternative is used in the 5 most similar protocols
The conditioned media extracted from hUCMSCs monolayers diluted with an equal value of DMEM-High glucose (CM50%).
3-The conditioned media extracted from hUCMSCs monolayers (50%) in combination with an IC50 value of atorvastatin(CM+ATO).
The DMEM-High glucose contains 4500 mg/L dextrose [27] . To match the glucose concentration, we supplemented 4500 mg/L dextrose (Gibco) to CM100(CM100%) and 2250 mg/L dextrose to CM50(CM50% )and CM+ATO treated groups.
The MCF7 cell line cultured in DMEM-High glucose without any treatment was considered as control. Three replicates were employed for both treated and untreated groups.
+ Open protocol
+ Expand
5

Paper Formation and Bacterial Strains

Check if the same lab product or an alternative is used in the 5 most similar protocols
Two market wood pulps, southern bleached softwood kraft (SBSK) and southern unbleached softwood kraft (UBSK) pulp from a paper mill in the Southeast United States were used for the formation of paper samples.
Two microbial strains, Salmonella enterica serotype Typhimurium MHM 124 (ATCC 14208) and Listeria innocua (ATCC 51742), were received as freeze-dried samples from the American Type Culture Collection (ATCC). Trypticase soy broth (TSB) and trypticase soy agar (TSA) were used for overnight cultures incubated at 37°C for both bacterial strains (Fisher Scientific, Waltham, MA, USA). Additional growth factors including dextrose, ammonium iron (III) citrate and anhydrous magnesium sulfate were acquired as well from Fisher Scientific (Waltham, MA, USA).
+ Open protocol
+ Expand
6

Engineered E. coli and Yeast Strains for Metabolite Production

Check if the same lab product or an alternative is used in the 5 most similar protocols
Daidzein was purchased from Agilent Technologies; p-coumaric acid and naringenin were purchased from Sigma. E. coli DH5α (Zymo Research) or TOP10 (Thermo Fisher) were used for DNA manipulation and amplification. E. coli was cultured at 37 °C in Luria–Bertani media (Fisher Scientific) with 100 mg/L carbenicillin (GoldBio) or 50 mg/L kanamycin (Sigma) for plasmid maintenance. All engineered yeast strains described in this work, as listed in Supplementary Table S1, were constructed within the CEN.PK2–1D strain (MATα; his3Δ1; leu2–3,112; ura3–52; trp1–289; MAL2–8c; SUC2). All yeast strains were grown at 30 °C in yeast extract peptone medium (YP) supplemented with 2% (w/v) dextrose (all components from Fisher Scientific), synthetic drop-out media (SD) [containing yeast nitrogen base (YNB) without amino acids (Sunrise Science Products), ammonium sulfate (Thermo Fisher), and the appropriate dropout mixture (Takara Bio) for plasmid maintenance] supplemented with 2% (w/v) dextrose. 200 mg/L Hygromycin B (Santa Cruz Biotechnology) was additionally used with SD media to select for the correct integrants.
+ Open protocol
+ Expand
7

Preparing Brain Slices for Electrophysiology

Check if the same lab product or an alternative is used in the 5 most similar protocols
Methods for preparing brain slices for electrophysiological recordings were as previously described (Dorris et al., 2014 (link)). Rats were deeply anesthetized with isoflurane gas and killed by decapitation. Trunk blood was collected at sacrifice for serum hormone levels assessment. The brain was dissected rapidly into ice-cold, oxygenated sucrose artificial CSF (s-ACSF) containing (in mM): 75 sucrose, 1.25 NaH2PO4, 3 MgCl2, 0.5 CaCl2, 2.4 Na pyruvate, 1.3 ascorbic acid from Sigma-Aldrich, St. Louis, MO, and 75 NaCl, 25 NaHCO3, 15 dextrose, 2 KCl from Fisher, Pittsburg, PA; osmolarity 295–305 mOsm, pH 7.2–7.4. Serial 300 μm coronal brain slices containing the caudate-putamen were prepared using a vibratome and incubated in regular ACSF containing (in mM): 126 NaCl, 26 NaHCO3, 10 dextrose, 3 KCl, 1.25 NaH2PO4, 1 MgCl2, 2 CaCl2, 295–305 mOsm, pH 7.2–7.4) for 30 minutes at 35°C, and at least 30 minutes at room temperature (21–23 °C). Slices were stored submerged in room temperature, oxygenated ACSF for up to 5 hours after sectioning in a large volume bath holder.
+ Open protocol
+ Expand
8

Preparation and Characterization of Cell Culture Media

Check if the same lab product or an alternative is used in the 5 most similar protocols
Sodium tetraborate, dextrose, and 2-[4-(2-hydroxyethyl)piperazin-1-yl]ethanesulfonic acid (HEPES) were from Fisher Scientific (Pittsburg, PA). Cosmic Calf Serum was from HyClone Laboratories (South Logan, UT). Sodium hydroxide (NaOH) and boric acid were purchased from EMD chemicals (San Diego, CA). RPMI 1640 was from Mediatech (Manassas, Va). Acetonitrile (ACN) was from Avantor Performance Materials (Center Valley, PA). Gentamicin was from Lonza (Walkersville, MD). Collagenase P was purchased from Roche Diagnostics (Indianapolis, IN). All other chemicals were from Sigma-Aldrich (St. Louis, MO) unless otherwise noted. All solutions were made with ultrapure DI water (NANOpure® Diamond system, Barnstead International, Dubuque, IA) and filtered with 0.2 μm nylon syringe filters from Pall Corporation (Port Washington, NY) unless otherwise noted. The pH for all solutions were adjusted using 1 or 5 M NaOH as needed.
+ Open protocol
+ Expand
9

Oral Glucose Tolerance Test Procedure

Check if the same lab product or an alternative is used in the 5 most similar protocols
Women who met study criteria were mailed instructions to follow an unrestricted diet for 3 days preceding the OGTT and to fast at least 10 hours the night before. At each in-person examination, fasting blood specimens were collected between 7:00 and 10:30 a.m. before consumption of 75 g of dextrose (Fisherbrand). Plasma aliquots obtained from fasting and 2-hour postload blood samples were stored at −70 °C until being transported to the University of Washington Northwest Lipid Metabolism and Diabetes Research Laboratories (Seattle, Washington), which performed enzymatic assays for glucose and double-antibody radioimmunoassays for total insulin developed by the Diabetes Endocrinology Research Center Immunoassay Core Laboratory (Seattle, Washington) (5 (link)).
+ Open protocol
+ Expand
10

Cultivation of Genetically-Modified Cambodian Malaria Parasites

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cam3.II K13WT, Cam3.II K13R539T (RF967), and Cam3.II K13C580Y are laboratory-adapted Cambodian isolates that were genetically engineered at the K13 locus as described in the literature 14 (link). Cam3.II K13C580Y parasites expressing β2 C31Y, β2 C31F, or β5 A20S were obtained from in vitro selection studies with WLL and WLW as described in the literature 36 (link). Parasite cultures were propagated in O+ red blood cells (RBCs) (anonymous donors, purchased from Interstate Blood Bank, Memphis, Tennessee). RBCs were stored at 50% hematocrit in ADSOL (2 mM adenine (Alfa Aesar, Haverhill, Massachusetts), 111 mM dextrose (Fisher BioReagents, Pittsburgh, Pennsylvania), 41.2 mM mannitol (Acros Organics, Fair Lawn, New Jersey), and 154 mM sodium chloride (Fisher BioReagents) for prolonged RBC vitality as described in ref 47 (link) at 4oC. Parasites were cultured in complete media (RPMI 1640 media supplemented with 0.01 mg/mL gentamicin (Gibco, Dun Laoghaire, Co Dublin, Ireland), 50 mg/mL hypoxanthine (Acros Organics), and 0.5% Albumax II (Invitrogen, Carlsbad, California)) at 5% hematocrit, and were maintained at 37oC in a Heracell™ VIOS 160i CO2 Incubator (Thermo Fisher Scientific, Waltham, Massachusetts) under hypoxic conditions (5% O2, 5% CO2, 90% N2). Gas was purchased from Matheson Gas (Irving, Texas).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!