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Powerwave xs2

Manufactured by Agilent Technologies
Sourced in United States, Germany

The PowerWave XS2 is a UV-Vis spectrophotometer designed for quantitative and qualitative analysis in life science applications. It features a wavelength range of 190-1100 nm and can perform measurements in both absorbance and transmittance modes. The instrument is equipped with a 2 nm spectral bandwidth and a photometric accuracy of ±0.005 Abs.

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221 protocols using powerwave xs2

1

MTT Assay for Cell Viability

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MTT assay was measured by dissolving MTT at concentration of 0.5 mg/mL in culture medium followed by filtering to remove insoluble matter and incubation for 2–4 h following the method of Mosmann (1983 (link)) with slight modification. Supernatant was pipette out and extract was be added in a solution of 0.4 N HCl 1: v/v-isopropanol 24 (1:24) v/v. After 25 min of incubation at 30–35°C (room temperature), the absorbance was taken at wavelength of 570 nm on a plate reader (Power Wave XS2, Bio Tek, USA) (Power Wave XS2, BioTek, USA).
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2

Ferric Reducing Antioxidant Power Assay

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FRAP assays were performed on a BIO-TEK PowerwaveTM XS2 microplate spectrophotometer to measure the reduction of ferric 2,4,6-tris-2-(pyridyl)- 1,3,5-triazine (TPTZ) to ferrous TPTZ, according to [36 (link)] and as described in detail in Erasmus et al. (2019) [30 (link)]. Samples were analyzed in triplicate and measurements expressed as units (1 unit equaling 1 μmol FeSO4/L).
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3

Antimicrobial Screening via Broth Dilution

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According to the National Committee for Clinical Laboratory Standards (NCCLS) standard, the antimicrobial experiments were performed using a broth dilution method (Mueller-Hinton broth). The tested bacteria were grown in liquid MH medium (2 g/L beef powder, 1.5 g/L soluble starch, 17.5 g/L acid hydrolyzed casein, PH = 7.4), and 50 µL of bacterial suspension (1.5 × 106 CFU/mL) were seeded in 96 well plates. Then the test compounds (50 µL) with different concentrations were added into each well, 256 μg/mL was a starting concentration to screen the potential antimicrobial activities of the tested compounds. The bacterial suspension without compounds was used as a positive control, while the MH medium was used as the negative control. After incubation at 37 °C in an electro-heating standing-temperature cultivator, the growth of the test organisms was inhibited completely with a lowest concentration. In this way, the minimum inhibitory concentration (MIC) of the tested compounds was defined. What’s more, the OD determination at 595 nm were measured by a multifunction microplate reader (PowerWaveTMXS2, BioTek® Instruments Inc., Winooski, VT, USA).
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4

Hemolysis Assay for Red Blood Cells

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Human red blood cells (RBCs) were freshly obtained according to a previous method58 (link) with minor modifications. Briefly, 2 mL of whole blood cells were suspended in 18 mL of 1× phosphate buffered saline (PBS), and the RBCs were collected by a centrifugation process at 1500 rpm for 15 minutes. Then, 900 μl of isolated RBCs were interacted with 100 μl of U-C-B colloids and incubated in CO2 for 1 hour followed by centrifugation at 8000 rpm for 4 minutes. The highest dose was fixed at 20 μg mL−1 and this concentration was found to be close to the U-C-B concentration. De-ionized water and PBS were interacted with isolated RBCs as positive and negative controls, respectively. The absorbance values at 540 nm for the interacted suspensions were analyzed using a microplate reader (Biotek, Power Wave XS2, Vermont, USA) mounted with software features designed to prevent common errors and boost productivity when operated at a temperature of 37 °C.
The percentage hemolysis of RBCs was calculated59,60 (link) according to the equation:
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5

Quantitative ALP Activity Assay and Staining

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OCCM‐30 was seeded in 24‐well plates, cultured to reach 80% confluence, pre‐treated with 10 ng/mL TNF‐α for 30 minutes and mineralization induced for 7 days. The cells were lysed in 1% Triton X‐100 on ice for 30 minutes. The total protein concentration was dertermined using a BCA protein assay kit (Beyotime). Then, 20 µL of lysate of each well was incubated in a 96‐well plate with 100 µL of fresh solution of p‐nitrophenyl phosphate substrate at 37°C for 30 minutes. The reaction was quenched by the addition of 80 µL of 0.5 mol/L NaOH solution. The absorbance at 405 nm was measured using a microplate‐reading spectrophotometer (PowerWave XS2, BioTek). A standard curve describing the relationship between OD value and p‐NP concentration was generated with the additional examination of gradient diluted p‐NP. The produced p‐NP concentration in each sample was calculated using the standard curve, and the relative ALP activity was expressed as the percentage in produced p‐NP concentration per unit time per mg protein.
For ALP staining, the cells were seeded in six‐well plates, treated and mineralization induced as those for ALP activity analysis. ALP staining was performed using a BCIP/NBT alkaline phosphatase colour development kit (Beyotime Institute of Biotechnology). Pictures were taken using a light microscope and a camera.
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6

Ferric Reducing Antioxidant Power Assay

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FRAP assay was modified from that reported by Tierney et al. [5 (link)]. The oxidant in the FRAP assay consisted of a reagent mixture that was prepared by mixing acetate buffer (pH 3.6), ferric chloride solution (20 mM), and TPTZ solution (10 mM TPTZ in 40 mM HCl) in the ratio of 10:1:1. A trolox stock solution (2 mM) was prepared and diluted with ethanol to give concentrations ranging from 0.1 to 0.5 mM. Prior to analysis, the FRAP reagent was heated and protected from light, until it had reached a temperature of 37 °C. 180 μL of freshly prepared FRAP reagent at 37 °C was pipetted into a 96-well plate with either a 20 μL test sample or standard (or ethanol for the blank). The absorbance was measured at 593 nm after 50 min on an automated Power Wave XS2 microplate spectrophotometer (Bio Tek, Winooski, VT, USA). The trolox standard curve was used to calculate the antioxidant activity of the samples which was expressed as milligram trolox equivalents (TE) per milligram of sample (mg TE·mg−1).
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7

Tzb and Everolimus Cytotoxicity Assay

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The NCI-N87 or POOL2 cells were seeded at 1,000 cells/100 µl into 96 well plates, and allowed to attach overnight. The medium was removed, and 95 µl fresh full medium with 5 µl Tzb (final concentration 1, 3.2, 10, 32 or 100 µg/ml), or everolimus (0.1, 1 or 10 µM). The control cells treated with 5 µl PBS was used as vehicle. When assessing the combination effect of Tzb (10 µg/ml) and an autophagy inhibitor, the concentration of BafA1, 3MA, and HCQ is 25 nM, 500 and 25 µM, respectively. After a 72 h culture (37°C, 5% CO2), 10 µl CCK-8 solution was added into each well at 37°C for 2 h and the optical densities were measured at 450 nm using a microplate reader (PowerWave XS2; BioTek Instruments, Inc.).
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8

Antioxidant Activities Quantification

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The antiradical activity (DPPH assay) of the samples was determined spectrophotometrically in a UV-Vis plate reader by monitoring the disappearance of DPPH at 517 nm, following the procedure described by Li and coworkers [51 (link)]. The radical scavenging activity was expressed as Trolox equivalents. The ORAC assay was conducted based on a previously reported method [21 (link)]. The results were expressed as μmol Trolox equivalents by using the standard curve calculated for each assay. The FRAP assay was conducted according to a previously reported procedure [21 (link),22 (link)]. Absorbance readings were taken using a visible-UV microplate reader (Power Wave XS2, Bio-Tek Instruments Inc., Winooski, VT, USA) at 593 nm. The antioxidant activities were expressed as μmol ascorbic acid equivalents.
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9

Yeast Cell Stress Response Assay

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Yeast cells in biological triplicates were back-diluted from overnight culture and were treated with various damaging agents at mid-log-phase (OD600 of 0.5–0.7) for 30 min88 (link). The cells were then washed twice and resuspended in YPD media to a final density of OD 0.8. In all, 5 μL of cell suspensions were added to 195 μl of YPD in 96-well non-treated polystyrene microplates, in technical repeats. The plates were incubated at 30 °C with shaking, and cell density was monitored every 10 min over 24–48 h at 600 nm on a microplate scanning spectrophotometer (Biotek PowerWave XS2).
Spot assays were performed using cells cultured to mid-log phase, treated with damaging agents for 30 min at 30 °C, washed twice and resuspended to OD ~ 0.8. Threefold dilutions were then spotted on YPD plates and incubated for 2–3 days at 30 °C.
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10

Quantitative ELISA for Mouse Antibodies

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Antibody titers in sera were determined by ELISA. Four AP-conjugated goat anti-mouse antibodies were used to detect IgA (Bethyl, cat. no. A90–103AP), IgG (cat. no. A90–131AP), IgG1 (cat. no. A90–105AP) and IgG2a (cat. no. A90–107AP). Briefly, 96-well plates were coated with 1 μg/ml PR8 virus hemagglutinin (HA) diluted in 100 μl/well of 50 mM sodium bicarbonate buffer (pH 9.6) overnight at 4°C and then blocked with 300 μl/well of PBS containing 1% BSA for 30 min at RT. The 50-fold-diluted sera in 100 μl/well PBS containing 1% BSA were then added to plates and incubated overnight at 4°C. Commercial mouse sera (Bethyl, cat. no. rs10101) were used as the reference to draw a standard curve for quantifying antibody concentration in sera. After washing, diluted AP-conjugated antibodies were added to each well (100 μl/well) and incubated for 1 h at RT. The plates were then washed and developed for 20 min with diethanolamine substrate (100 μl/well; KPL, cat. no. 508000). The reaction was then stopped with EDTA stop solution (100 μl/well; KPL), the plates read at 405 nm using the PowerWaveXS2 (Biotek), and the antibody concentrations calculated.
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