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Iscript cdna kit

Manufactured by Bio-Rad
Sourced in United States, Germany, Denmark, France

The IScript cDNA kit is a reagent system used for the reverse transcription of RNA into complementary DNA (cDNA). The kit contains the necessary components for the conversion of RNA into single-stranded cDNA, which can then be used for various downstream applications, such as gene expression analysis and PCR-based studies.

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182 protocols using iscript cdna kit

1

Quantifying lncRNA-SNHG16 and GLUT1 Expression

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Trizol (Invitrogen, USA) was utilized to extract total RNA from prostate biopsies with all operations performed following the manufacturer’s instructions. All RNA samples were digested with DNase I to remove genomic DNA. After cDNA synthesis through reverse transcriptions using Bio-Rad iScript cDNA Kit (Bio-Rad), PCR reactions were carried out using SYBR® Green Real-Time PCR Master Mixes (Thermo Fisher Scientific, USA). Thermal conditions were 95°C for 55s, and 40 cycles of 95°C for 22s and 60°C for 46s. Primers were: 5′-CCCAAGCTTGCGTTCTTTTC-3′ (sense) and 5′-CCGGAATTCTGACGGTAGTTTC-3′ (anti-sense) for lncRNA-SNHG16; 5′-AAGAAGCTGACGGGTCGCCTCATGC-3′ (sense) and 5′-TGAGAGGGACCAGAGCGTGGTG-3′ (anti-sense) for GLUT1; 5ʹ-GACCTCTATGCCAACACAGT-3ʹ (sense) and 5ʹ-AGTACTTGCGCTCAGGAGGA-3ʹ (anti-sense) for β-actin. 2−ΔΔCT was employed to calculate the expressions.
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2

Quantifying mRNA and miRNA Expressions

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Digested RNA samples were subjected to reverse transcription using Bio-Rad iScript cDNA Kit to prepare cDNA samples (Bio-Rad Laboratories, Inc.). With cDNA samples as template, qPCR reactions were prepared using SYBR-Green Master Mix (Bio-Rad Laboratories, Inc.). The expression levels of UASR1 and JAK2 mRNA were determined with GAPDH as the endogenous control. The expression levels of mature miR-375 were detected using All-in-One miRNA qRT-PCR Detection Kit (GeneCopoeia) with U6 as the internal control. The sequences of the primers used were as follows: UASR1, forward, 5′-CCCTCCTCAAACACACATCC-3′ and reverse, 5′-TTAAGGAAATTAAAAATACC-3′; miR-375, forward, 5′-GGCTCTAGAGGGGACGAAGC-3′ and reverse, 5′-GGCAAGCTTTTTCCACACCTCAGCCTTG-3′; JAK2, forward, 5′-TCTATTTTATTATGGTTTCCCTTG-3′ and reverse, 5′-TTTTACTTATTTACCTCATTTCCC-3′; GAPDH, forward, 5′-GCACCGTCAAGGCTGAGAAC-3′ and reverse, 5′-TGGTGAAGACGCCAGTGGA-3′; and U6, forward, 5′-GCTTCGGCAGCACATATACTAAAAT-3′ and reverse, 5′-CGCTTCACGAATTTGCGTGTCAT-3′. PCR reactions were performed in triplicates and Cq values were processed using the 2−ΔΔCq method (15 (link)).
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3

Quantitative Real-Time PCR Analysis

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Total kidney or cell mRNA was extracted using Bio-Tri RNA lysis buffer (Bio-Lab, Israel), followed by DNase I treatment (Thermo Scientific, IL, USA), and reverse transcribed using the Iscript cDNA kit (Bio-Rad, CA). Real-time PCR was performed using iTaq Universal SYBR Green Supermix (Bio-Rad, CA) and the CFX connect ST system (Bio-Rad, CA). The primers used to detect mouse or human genes are listed in Supplementary Tables 1, 2. Mouse and human genes were normalized to Ubc or RPLP, respectively.
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4

RNA Isolation and qRT-PCR Analysis

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Isolated mouse tissues were homogenized by a Minilys homogenizer. Mouse aortic endothelium RNA was isolated as previously described [17 (link)]. Total RNA from homogenized tissues or cultured cells was extracted using miRNeasy mini kit followed by cDNA synthesis using iScript cDNA kit (Bio-Rad). Quantitative RT-PCR was performed using Universal SYBR Green Supermix (Bio-Rad) and CFX386 Touch™ Real-Time PCR Detection System (Bio-Rad) as previously described [17 (link)]. qRT-PCR primers for the indicated genes are included in Supplementary Table 1.
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5

Fatty Acid Treatment of Hepatoma Cells

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Human HepG2, mouse Hepa 1–6 and rat Fao hepatoma cells at 75% confluency were incubated with a mixture of oleate and palmitate (ratio 2:1, total concentration 1.2 mM) coupled to FA-free BSA (Roche Applied Sciences). All fatty acid stocks were initially reconstituted in absolute ethanol. Sub-stocks of fatty acids at 25 mM were prepared in filter-sterilized KOH at 70 mM. Fatty acids were diluted in Dulbecco's modified Eagle's medium (DMEM) containing 3% FA-free BSA to obtain the desired final concentrations. After treatment, cells were washed with ice-cold PBS (Lonza) and stored at −20 °C for further analysis.
Total RNA was isolated using TRIzol® Reagent (Invitrogen, ThermoFisher Scientific). cDNA was synthesized from 500 ng of RNA using the iScript cDNA kit (Bio-Rad Laboratories, Hercules, CA, USA) according to the manufacturer's instructions. Real-time polymerase chain reaction (RT-PCR) was performed with the CFX96 or CFX384 Touch™ Real-Time detection system (Bio-Rad Laboratories), using a SensiMix™ (BioLine, London, UK) protocol for SYBR green reactions. Mouse 36b4 expression was used for normalization.
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6

Real-Time qPCR Quantification of Murine and Humanized Targets

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RNA was extracted with Qiagne RNAeasy columns (Valencia, CA); cDNA was prepared following the manufacturer’s instructions (Applied Biosystems, Foster City, CA) and used as template for real-time PCR. All the primers and probes in this work were provided by Applied Biosystems, and were used on the GeneAmp 7500 Sequence Detection System (Applied Biosystems). Expression was normalized to the expression of GAPDH. All murine qPCR primers and reagents were obtained from Applied Biosystems.
For humanized mouse studies, qPCR was performed with SYBR Green (Bio-Rad, Hercules, CA) using a CFX96 real-time PCR (Bio-Rad) machine on cDNA generated with the iScript cDNA kit (Bio-Rad) on 1 μg total RNA isolated from whole tissue homogenized in TRIzol (Life Technologies, Carlsbad, CA). 2 μM of each human target primer was used in the reaction and quantified by normalizing the cycle threshold (Ct) of the target gene to the Ct value of HPRT and the fold change was compared to a pooled human RNA control sample using the formula 2−(Ct(target) − Ct (HPRT)).
Sequences for human targets are as follows:
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7

Modulating Wnt Signaling in EBs

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EBs were plated at d7 on laminin-coated plastic wells or laminin-coated glass coverslips and treated with the WNT antagonist IWP2 (5 μM) (Tocris) from d12 to d20 or with the WNT agonist CHIR99021 (3 μM) (Tocris) from d14 to d20. DMSO served as the vehicle control for all experiments. Treated coverslips were fixed at d18 and immunostained as described above. Treated wells were collected after 30 days of differentiation and total RNA was extracted with RNAeasy spin columns (Qiagen) and reverse transcribed with iScript cDNA kit (BioRad) according to manufacturers' instructions. Quantitative PCR was performed with SSO Advanced SybrGreen master mix (BioRad) on a Step One Plus Real Time PCR system (Thermo Fisher). Relative expression was normalized to the geometric mean of two reference genes and the average 2−ΔΔCq ± SEM of three replicates was plotted using Graph Pad Prism 6. Statistical significance (p<0.05) was calculated with an unpaired two-tailed Student's t-test. Primer sequences are listed in Table S2.
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8

Validating Microarray Data with qRT-PCR

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Fold-change data from microarrays were validated by performing sets of Quantitative Real-Time PCRs (qRT-PCR) with a CFX-96 Real-time System (Bio-Rad, Hercules, CA) using the SYBR green detection method (SensiMix SYBR & Fluorescein one-step PCR reagent; Bioline; Taunton, MA). cDNA templates for qPCR validations were synthesized using the iScript cDNA kit (Bio-Rad; Hercules, CA) from original microarray RNA samples according to manufacturer instructions. As detailed in preceding reports,17–19 (link) microarray results were independently verified in all instances by regressing microarray fold change data (x-axis) against qRT-PCR fold change data (y-axis).
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9

Total RNA Isolation and qPCR Analysis

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Total RNA was isolated using micro-RNeasy kit (Qiagen #74104) and reverse transcribed using the iSCRIPT cDNA kit (BioRad #1708891) as per manufacturer’s instructions. qPCR analysis was performed on BioRad CFX96 Real Time System using TaqMan probes described in Table 1.
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10

Profiling Stemness and DNA Repair Genes

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Total RNA was extracted using RNA STAT-60 Reagent (Tel-Test Inc., Friendswood, TX, USA) and reverse-transcribed using an iScript cDNA kit (Bio-Rad, Hercules, CA, USA). Real-time PCR was used to measure ALDH, NANOG, OCT4, SOX2, NIEL3, RAD2, RAD9A, RAD9B, RAD51, and RAD23A expression, and human glyceraldehyde-3-phosphate dehydrogenase (GAPDH), or beta-actin (ACTB/β-actin) were used as references. The relative expression of target genes was calculated using the ΔΔCt method. Results are presented as the means ± SD of at least triplicate experiments. Primers are listed below (Table 1).
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