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5 protocols using ab13822

1

Western Blot Protein Analysis Protocol

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Cells were homogenized in either Radioimmunoprecipitation assay (RIPA) buffer (Thermo Fisher) supplemented with protease inhibitor mixture (Pierce), or directly in 1× Laemmli buffer (Bio-rad, Hercules, CA, USA) supplemented with β-mercaptoethanol (Sigma-Aldrich, St. Louis, MO, USA). Protein concentrations of RIPA lysates were determined using a bicinchoninic acid (BCA) assay kit (Thermo Fisher) with BSA as a standard. Proteins (20–40 μg) were separated on a run on 4-20% polyacrylamide Tris-glycine gels (Thermo Fisher) and transferred to polyvinylidene difluoride (PVDF) membranes. The transferred membranes were blocked for 1 hour at room temperature in Odyssey Blocking Buffer (LI-COR, Lincoln, NE, USA) and incubated at 4°C overnight with primary antibodies against: human and rhesus PECAM1 (1:500; JC/70A, Abcam, Cambridge, MA, USA), human and mouse VE-cadherin (1:200, C-19, Santa Cruz Biotechnologies, Santa Cruz, CA, USA), phospho-AKT (Ser473) (1:1000, 12694S, Cell Signaling, Danvers, MA, USA), phospho-ERK1/2 (Thr202/Tyr204) (1:1000, 4370, Cell Signaling), α-tubulin (1:5000, ab89984, Abcam), Vinculin (1:1000, V4139, Sigma), and β-actin (1:1000, ab13822, Abcam). The signals were visualized with an Odyssey imaging system.
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2

Immobilized Nanorods for Protein Detection

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One milliliter of cetrimonium bromide (CTAB)-capped gold nanorods (Nanopartz Inc.) was mixed with 100 μL of a 20 mM solution of 11-mercaptoundecanoic acid (11-MUA, Sigma-Aldrich) prepared in ethanol. The mixture was sonicated for 90 min at 55 °C and kept at room temperature overnight. These nanorods were centrifuged at 5500 rcf for 10 min and redispersed in water to remove the excess 11-MUA. A single nanorod was immobilized on the tip of the nFTP. The assembled nFTP was incubated in 100 mM 1-ethyl-3-(3-(dimethylamino)propyl)carbodiimide (EDC, Sigma-Aldrich) with 100 nM of antibodies to the target proteins. In this work, we used anti-Aβ42 (ab10148, Abcam), anti-tau-PS262 (sc-32828, Santa Cruz) and anti-β-Actin (ab13822, Abcam). To block the nonspecific binding, the nFTP was incubated in the cell culture medium in which fetal bovine serum (FBS) was replaced by 1% bovine serum albumin (BSA).
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3

Detecting Endogenous SETMAR Isoforms

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Endogenous SETMARs (2100 and 1200 isoforms) were detected using a SETMAR rabbit polyclonal antibody (ab-129455, abcam, dilution1/2500), followed by peroxidase-coupled secondary antibody (SantaCruz) and an enhanced chemi-luminescence reaction (ECL signal, GE healthcare), prior to visualization by a CCD camera (Fuji Las 4000). ACTIN was detected using a Beta-Actin chicken polyclonal antibody (ab-13822, abcam, dilution 1/5000). V5-tagged SETMAR proteins were detected using a V5 Mouse Monoclonal Antibody (Invitrogen, dilution 1/5000).
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4

Protein Extraction and Western Blot Analysis

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Mice were anesthetized with ketamine/xylazine and transcardially perfused with PBS. The brain and spinal cords were quickly harvested. The brain and spinal cords were dounced using a tissue douncer with RIPA buffer (pH 7.5, 25 mM Tris-Cl, 150 mM NaCl, 1 mM EDTA, 1% Triton X-100, 0.1% SDS) and the appropriate dilution of protease and phosphatase inhibitors. The dounced tissue was then sonicated and stored at −80 °C. Protein levels were normalized using a Bradford Assay and were assessed with Li-Cor Odyssey CLx infrared imaging system. Primary antibodies used for western blot were used as follows: goat anti-CCL21-unconjugated (1:100; AF457-SP; R&D Systems), rabbit anti-CCR7-unconjugated (1:100; ab32527; Abcam), rabbit anti-VEGFC-unconjugated (1:100; ab83905; Abcam), and chicken anti-ß-actin-unconjugated (1:1000; ab13822; Abcam). The appropriate secondary antibodies were used as follows: donkey anti-rabbit IgG-IRDye 800CW (1:2000; 926–32213; Li-Cor), donkey anti-goat IgG-IRDye 800CW (1:2000; 925–32214; Li-Cor), and donkey anti-chicken IgG-IRDye 680LT (1:2000; 926-68028; Li-Cor). For a detailed list of reagents, refer to Supplementary Table 1. Representative uncropped western blots for VEGFC and ß-actin can be found in Supplementary Fig. 11.
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5

Western Blot Analysis of HSP70 Expression

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All steps in the following section were carried out at room temperature. Protein samples transferred to the PVDF membrane were blocked by use of 5% BSA in PBS-T blocking buffer for 1 hour. The membrane was washed with PBS-T three times for 10 minutes each time on a rocking bed. Antibody probing was carried out in 1% BSA-TBS-T blocking buffer at 1:1000 HSP70 and 1:2000 β-actin (Abcam®, ab13822, polyclonal, chicken-α-human) antibody dilutions. Three wash steps were performed again before administration of secondary conjugated LI-COR® antibodies (Cambridge, UK) for 30 minutes away from light. Three final wash steps were carried out, away from light, before the membrane was scanned and analysed with an Odyssey® Infrared Imaging System (LI-COR®, Nebraska, USA). The control ratio of HSP70 to β-actin was calculated and normalised.
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