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3 protocols using trop2

1

Liver Cell Sorting and Profiling

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Liver cells were sorted from mixed, hepatocyte, and non-parenchymal cell
fractions on an Aria Fusion I using a 100 μm nozzle. Cells from the HCC
samples were not fractionated and were sorted directly after tissue digestion.
Zombie Green (Biolegend) was used as a viability dye. Cells were stained with
human specific antibodies against CD45 (Biolegend), PECAM1 (Biolegend), CD34
(Biolegend), CLEC4G (R&D systems), ASGR1 (BD Biosciences), EPCAM
(R&D systems), and TROP2 (Biolegend). Organoids were stained with
antibodies against EPCAM and TROP2. For the humanized mouse samples, cells were
stained either with antibodies against ASGR1 and PECAM1 or human HLA-ABC (BD
Biosciences) and mouse H2-Kb (BD Biosciences). Viable cells were sorted in an
unbiased fashion or from specific populations based on the expression of markers
into the wells of 384 well plates containing lysis buffer.
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2

Identification and Characterization of Circulating Tumor Cells

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CTCs were assessed by immunofluorescence staining. The following antibodies were used to identify CTCs and assess EPCAM and TROP-2 staining as indicated in the figure legends: Anti-CD45 (BioLegend Cat# 304018, RRID:AB_389336), Anti-CD34 (BioLegend Cat# 343508, RRID:AB_1877133), Anti-CD11B (BioLegend Cat# 101218, RRID:AB_389327), Anti-CD66B (BioLegend Cat# 305109, RRID:AB_2563170), Anti-Pan cytokeratin (BioLegend Cat# 628602, RRID:AB_439775 or Abcam Cat# ab49779, RRID:AB_869395), Anti-Androgen Receptor (Cell Signaling Technology Cat# 5153S, RRID:AB_10692774), Anti-EPCAM (Abcam Cat# ab112068, RRID:AB_10861805) or Anti-TROP-2 (BD Biosciences Cat# 940370, RRID:AB_2876239) and Hoechst 33342 (Thermo Fisher Scientific). Extracellular antibodies were stained at 4°C for 30 minutes. For intracellular and nuclear staining of cells (Fig. 2), cells were stained as described by Sperger and colleagues (30 (link)). For intracellular staining (Fig. 4), cells were permeabilized, stained, and washed with BD Perm/Wash. Images were taken with a 10x objective using Nikon Eclipse Ti-E with an ORCA-Flash 4.0 V2 Digital CMOS camera (Hamamatsu) and NIS-Elements AR Microscope Imaging Software (RRID:SCR_014329, Nikon Instruments). Images were background subtracted, and CTCs were determined by Hoechst-positive staining, cytokeratin+ and CD45/CD34/CD66b.
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3

Liver Cell Sorting and Profiling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Liver cells were sorted from mixed, hepatocyte, and non-parenchymal cell
fractions on an Aria Fusion I using a 100 μm nozzle. Cells from the HCC
samples were not fractionated and were sorted directly after tissue digestion.
Zombie Green (Biolegend) was used as a viability dye. Cells were stained with
human specific antibodies against CD45 (Biolegend), PECAM1 (Biolegend), CD34
(Biolegend), CLEC4G (R&D systems), ASGR1 (BD Biosciences), EPCAM
(R&D systems), and TROP2 (Biolegend). Organoids were stained with
antibodies against EPCAM and TROP2. For the humanized mouse samples, cells were
stained either with antibodies against ASGR1 and PECAM1 or human HLA-ABC (BD
Biosciences) and mouse H2-Kb (BD Biosciences). Viable cells were sorted in an
unbiased fashion or from specific populations based on the expression of markers
into the wells of 384 well plates containing lysis buffer.
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