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50 protocols using optiphase supermix

1

Binding Assay for Cu-labeled Y3-TATE Analogues

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Membrane preparations of HCT116-SSTr2 cells were used for binding assays, and assays were performed on Perkin-Elmer Unifilter (Waltham, MA) 96-well, GF/B filtration plates using previously described methods, with some modifications.28 (link),29 (link),31 (link) Membranes were diluted in binding buffer (50 mM Tris-hydrochloride [pH 7.4]; 5 mM MgCl2·6 H2O; 0.1% bovine serum albumin; and 0.5 mg of aprotinin, 200 mg of bacitracin, 10 mg of leupeptin, and 10 mg of pepstatin A per milliliter), and 15 µg of membrane protein was used per well. Increasing concentrations of 64Cu-labeled Y3-TATE analogues were added to membranes to measure total binding, and nonspecific binding was determined by conducting the assay in the presence of an excess of Y3-TATE. After incubation of the membranes at room temperature for 2 hours, the medium was removed and the membranes were washed twice with 200 µL of binding buffer. OptiPhase Super-Mix (50 µL; PerkinElmer, Waltham, MA) was added to each well, and bound activity was measured with a liquid scintillation and luminescence counter (2450 Microbeta2, PerkinElmer). All dissociation constant (Kd) values were estimated from nonlinear curve fitting of bound peptide versus the sum of the concentrations of 64Cu-Y3-TATE analogues and Y3-TATE using Prism software (GraphPad, La Jolla, CA).
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2

Quantifying Zinc Binding to Human Serum Albumin

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Samples containing 15.0 µM HSA and different concentrations of 65ZnCl2 (1, 2.5, 5, 10, 16, 19, and 25 µM 65Zn2+) were pipetted into separate sample compartments of the device, as described in the previous section, with equal volumes of diluted dialysis buffer in the adjacent buffer compartments. The device was agitated/incubated at 37 °C for 6 h. Then, immediately following the 6 h of incubation, 500 µL of sample from the buffer compartments were removed for quantitation of free 65Zn2+ using a PerkinElmer MicroBeta TriLux 1450 liquid scintillation counter. A 90 µL aliquot of sample was pipetted into a well of a 96-well plate, followed by the addition of 90 µL of scintillation cocktail (OptiPhase Supermix, PerkinElmer) to the sample-containing well. Standards of known 65Zn2+ concentrations in dialysis buffer were treated in the same manner to generate an external standards calibration curve. The plate was placed into the instrument for counting, following a 30 min delay.
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3

Radioligand Binding Assay for Glucagon

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Cells were harvested 24 h after transfection, washed twice and incubated with blocking buffer (F12 supplemented with 33 mM HEPES, pH 7.4 and 0.1% BSA) for 2 h at 37 °C. Cells were treated with PBS or DTT for 10 min before homogeneous binding. They were then washed twice with PBS and were incubated in binding buffer with constant concentration of 125I-glucagon (40 pM) and different concentrations of unlabelled glucagon (3.57 pM∼1 μM) at room temperature for 3 h. Cells were washed three times with ice-cold PBS and lysed by 50 μl lysis buffer (PBS supplemented with 20 mM Tris-HCl, 1% Triton X-100, pH 7.4). The plates were subsequently counted for radioactivity (counts min−1) in a scintillation counter (MicroBeta2 Plate Counter, PerkinElmer) using a scintillation cocktail (OptiPhaseSuperMix, PerkinElmer).
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4

Chromium-51 Release Cytotoxicity Assay

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A total of 1 × 106 target cells were dissociated from plates, washed twice in RPMI, resuspended in 100 µl of a 7.4 MBq Na251CrO4 solution (GE Healthcare Life Sciences, Piscataway, NJ, USA), diluted in growth media, and then incubated for 1 h in a humidified 5% CO2 atmosphere at 37°C. After washing three times with RPMI, the labeled cells were resuspended in their growth media and seeded in 96-well plates at 5 × 104 cells per well in quadruplicate. Effector cells were added at the specified effector to target cell ratios (E:T) and were incubated for 4 h at 37°C, 5% CO2. The supernatant was removed, added to Optiphase Supermix (PerkinElmer), and radioactivity measured with a beta counter (MicroBeta TriLux, PerkinElmer, Waltham, MA, USA). The degree of cytotoxicity was determined according to the formula: % cytotoxicity = [(sample release) − (spontaneous release)]/[(maximum release) − (spontaneous release)]. Spontaneous release was determined by incubating target cells in medium alone. Maximum release of target cells was measured following treatment with 10% detergent Triton X-100 (Sigma). Error bars represent the SD error of the acquired values. To test for significance, a Student’s t-test was performed with the degree of cytotoxicity values of each ratio against the other conditions. *p < 0.05, **p < 0.01.
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5

Sodium-Dependent Leucine Uptake Assay

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Cells were seeded on 24-well plates at a density of 1 × 105 cells/well for 2 days before experiment. Cells were subsequently incubated with Na+ containing buffer (125 mM NaCl, 4.8 mM KCl, 1.3 mM CaCl2, 1.2 mM MgSO4, 25 mM HEPES, 1.2 mM KH2PO4 and 5.6 mM glucose, pH 7.4) or Na+-free buffer (125 mM choline chloride, 4.8 mM KCl, 1.3 mM CaCl2, 1.2 mM MgSO4, 25 mM HEPES, 1.2 mM KH2PO4 and 5.6 mM glucose, pH 7.4) containing 19 µM leucine, 1 µM [14C] l-leucine (> 8.14 GBq/mmol, Moravek, CA, USA), and 0.01–100 μM JPH203 for 2 min at 37 °C. The cells were solubilized with 0.1 N NaOH and cell lysates were added to OptiPhase SuperMix (PerkinElmer, Waltham, MA, USA). The radioactivity was measured by a liquid scintillation counter; LSC-7400 (Hitachi-Aloka Medical, Tokyo, Japan).
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6

Competitive Binding Assay for Ls-AChBP

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The ability of VxXIIB variants to displace the binding of [3H]-epibatidine to the recombinantly expressed Ls-AChBP was determined in competitive radioligand binding assays. Briefly, [3H]-epibatidine (1 nM final concentration) and increasing concentrations of test ligand in a final volume of 100 ml were incubated in 96-well plates (Flexible PET Microplate, Perkin Elmer) precoated with 1 ng/ml of Ls-AChBP per well in binding buffer (phosphate buffered saline with 0.05% bovine serum albumin). The mixture was then removed and 100 ml of scintillant (Optiphase Supermix, Perkin Elmer) added to each well. Bound radioactivity was measured with a Wallac 1450 MicroBeta liquid scintillation counter (Perkin Elmer).
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7

Glucose Uptake Measurement in Cardiomyocytes

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Cardiomyocytes cultured in 12-well plates were incubated in glucose-free medium and treated with 100 nM insulin (Humalog, Eli Lilly and Company, Indianapolis, IN) for 30 minutes. To measure glucose uptake, 0.2 mM 2-deoxyglucose mixed with 0.077 µCi/ml [14C]2-deoxyglucose (Perkin-Elmer, Waltham, MA) was added to the cell culture medium for additional 30 minutes (specific activity 385 µCi/mmol). The cells were washed three times in PBS, harvested in 0.1 M NaOH and the lysed cells counted by conventional liquid scintillation with OptiPhase SuperMix scintillation fluid (Perkin-Elmer). Glucose uptake was normalized to the cell lysate protein content.
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8

U2OS and ARN8 Cell-Based Radiolabeled Uridine Uptake Assay

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100,000 (24-h assay) or 200,000 (15-min assay) U2OS or ARN8 cells were seeded per well in 6-well plates in 2 ml of fully supplemented culture medium as described above. 24 h postseeding, medium was removed, and cells were treated with the indicated compounds for either 15 min or 24 h in 2 ml of FBS-free medium supplemented with serum replacement 3 (Sigma–Aldrich #S2640). At the end of the treatment, an extra well of each treatment was harvested in 100 μl of 1× LDS (62.5 mm Tris-HCl, pH 6.8, 10% glycerol, 1% LDS) for quantification of protein levels to determine the level of cell death after 24 h for normalization with protein concentration determined by the Bio-Rad DC protein assay (Bio-Rad #5000111). [3H]Uridine (PerkinElmer Life Sciences #NET367001MC) was prepared in serum replacement medium to a final emission of 3.65 μCi ml−1 and added to cells for 10 min. Following 10 min, the cells were washed with four quick changes of 1 mm unlabeled uridine prepared in ice-cold transport buffer (20 mm Tris-HCl, pH 7.4, 130 mm NaCl, 3 mm K2HPO4, 1 mm MgCl2, 5 mm glucose, 2 mm CaCl2). The samples were then harvested in 100 μl of 10% SDS. 900 μl of Optiphase Supermix (PerkinElmer Life Sciences #1200-439) was added to each sample, and the cpm were measured using a 1450 MicroBeta JET for liquid scintillation (PerkinElmer Life Sciences/Wallac).
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9

Competitive Radioligand Binding Assay for nAChR

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Competitive radioligand binding assay with 3H-epibatidine (specific activity 1.11–2.59 TBq/mmol) and nAChR agonists and antagonists was used to determine the functional activity of the recombinant Ls- and Ac-AChBPs. The proteins were coated onto 96 well plates (Flexible PET Microplate, Perkin Elmer) at a concentration of 8 μM total protein. Serial dilutions of nAChR ligands together with a fixed concentration of 3H-epibatidine (1 nM) were incubated with the immobilized protein in 100 μL of assay buffer (phosphate buffered saline with 0.05% bovine serum albumin) for 1 h at 4°C. Unbound ligands were washed manually followed by addition of 100 μL scintillant (Optiphase Supermix, Perkin Elmer). Plates were incubated with the scintillant for 2 min on a shaker and radioactivity measured with a Wallac 1450 MicroBeta liquid scintillation counter. Binding data were evaluated by a nonlinear, least squares one-site competition fitting procedure using GraphPad Prism 6.0 (GraphPad Software Inc., San Diego, CA, USA). The radioligand binding assays were performed in triplicate in three separate experiments (n = 3), with IC50 values reported as mean ± standard error of the mean (S.E.M).
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10

Glucose Uptake Assay in Adipocytes

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For glucose uptake assays, fully differentiated LipPD1 and SGBS adipocytes (differentiated until day 12) were incubated as described before [15 (link)]. Cells were incubated in culture medium overnight, washed and incubated in 20 mM Hepes Krebs Ringer/0.1% BSA buffer, pH 7.4 (136 mmol/l NaCl, 4.7 mmol/l KCl, 1.25 mmol/l MgSO4, 1.25 mmol/l CaCl2) for 2 h at 37°C. Afterwards, cells were stimulated with 1–106 pM insulin for 2 h at 37°C. Glucose uptake was determined by adding [14 C]-2-deoxyglucose (#NEC720A050UC, Perkin Elmer) to a final concentration of 0.5 µCi/ml for 5 min. The reaction was stopped by adding 10 mmol/l 2-deoxyglucose and subsequent washing in ice-cold PBS, and cell lysates were prepared in 0.1% SDS (ROTH, #1410.2). Radioactivity was determined after adding scintillation fluid (OptiPhase-SuperMix, #1200-439, Perkin Elmer) using a WALLACE 1409 DSA Liquid Scintillation counter. Analyses were performed in quadruplicates.
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