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Ab41928

Manufactured by Abcam
Sourced in United States, United Kingdom

Ab41928 is a laboratory equipment product manufactured by Abcam. It is designed for use in scientific research applications. The core function of this product is to provide a tool for researchers to conduct their experiments and investigations. No further details about the intended use or specific features of this product can be provided while maintaining an unbiased and factual approach.

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23 protocols using ab41928

1

Immunofluorescence and Western Blot Analysis of Liver Tissue

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For immunofluorescence assay, frozen liver tissue sections were prepared and performed for 30 min at normal temperature before commencing with the staining protocol. Then, the slices were washed with PBS three times and blocked with 5% Bovine Serum Albumin (BSA) for 1 h. SREBP1 (#ab71983, 1:200, Abcam, USA) and PPARγ (#ab41928, 1:100, Abcam, USA) primary antibodies were incubated overnight. Slides were incubated with Anti-rabbit or anti-mouse IgG secondary antibody (#2975, #4408, 1:500, Cell Signaling Technology, USA) for 1 h, followed by nuclear staining with 4’,6-diamidino-2-phenylindole (DAPI) (#D9542, Sigma, USA) for 30 s. Mounted slides were observed using fluorescence microscopy (Olympus, Japan) to obtain the fluorescence images.
Western Blot analysis was operated as described in our previous studies (38 (link)). The primary antibodies included anti-SREBP1 (#ab71983, 1:1000, Abcam, USA), anti-PPARγ (#ab41928, 1:1000, Abcam, USA), and anti-PPARα (#ab41928, 1:1000, Abcam, USA). As loading control, β-Actin (#ab8226, 1:2000, Abcam, USA) was used.
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2

PPARγ Binding at Srebp1 Promoter

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Expanded iNKT cells were activated by immobilized anti-CD3 plus anti-CD28 overnight in the presence or absence of T007. Cells were harvested and cross-linked with 1% formaldehyde at room temperature for 15 min, followed by neutralization with 125 mM glycine. Digestion and isolation of protein-bound DNA was performed using a magnetic ChIP kit (Thermo scientific). Antibody against PPARγ (Abcam ab41928, 1:100 dilution) and IgG control antibody (Santa Cruz sc-2025, 1:100 dilution) were used for ChIP. To detect the binding sites of PPARγ at srebp1 promoter region, different sets of primers covering the −2000 bp to +1 bp region of Srebf1 promoter were used for qPCR experiments, and were listed in Supplementary Methods. The fold enrichment is normalized to IgG control.
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3

Femoral Histomorphology and Cellular Activity

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The distal femora were embedded into olefin for histological and immunohistochemical staining after microstructures analysis. The trabecula histomorphology was observed by hematoxylin-eosin stain, and the osteoblasts and osteoclasts cell activity were evaluated by osteocalcin (OCN) staining (ab41928, Abcam Biotechnology, MA, United States; the dilution ratio is 1:100) and tartrate-resistant acid phosphatase (TRAP) staining (Sigma-Aldrich St. Louis., MO, United States), respectively. In immunohistochemistry semiquantitative assays, the number of positive cells was calculated by cells per bone surface (B.S), and the staining intensity was quantified by integrated optical density per area of positive cells (IOD/area, mean density) in four different images taken at ×400 magnification, every slide with Image Pro Plus software (Media Cybernetics, MD, United States).
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4

Quantitative Immunoblotting of PPAR-γ and P50

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At least 3 × 106 monocytes were lysed in radio immunoprecipitation assay (RIPA) buffer containing a proteinase and phosphatase inhibitor (Beyotime) for 30 min at 4°C. Lysates were centrifuged for 15 min at 14,000g at 4°C and the supernatant was discarded. Protein concentration in cell lysates were measured via the Bradford assay (HyClone-Pierce, USA). Proteins were separated by electrophoresis using 12% vertical dodecyl sulfate-polyacrylamide gel and transferred onto nitrocellulose membranes (Millipore, USA). The PVDF membranes was immersed in 5% skim milk for 1 h at room temperature and then immunoblotted with primary antibodies, icluding rabbit anti-human P50 (ab7971, 1:5,000, Abcam, USA) or mouse anti-human PPAR-γ antibody (ab41928, 1:1,000, Abcam, USA) for 12–16 h at 4°C, followed by incubation with the secondary Goat anti-mouse or anti-rabbit IgG antibody (H&L) (GenScript, USA). The band intensity was measured by an ECL Western blot detection kit (Thermo Scientific, USA). The expression level of PPAR-γ and P50 was quantified by densitometry with normalization to GAPDH.
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5

ChIP-qPCR Analysis of PPAR-γ and SIRT1

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ChIP analysis was conducted with a ChIP Assay Kit (Millipore) following the manufacturer’s instructions. Sorted monocytes were cross-linked in 1% formaldehyde for 10 min at room temperature, and then, we added glycine to stop the reaction. The fixed cells were washed with 20 ml ice-cold phosphate-buffered saline twice and then lysed. The cell lysates were centrifuged and resuspended before being sonicated to generate 500- to 1,000-bp fragments. After that, the indicated antibodies were added and incubated with the sheared DNA. The immune compounds were precipitated with protein A agarose beads, and then washed and eluted. The precipitated DNA was purified, and then, the target DNA was amplified by qPCR. The primers used are presented in Supplementary Table S3. Anti-PPAR-γ (Abcam, ab41928) and anti-SIRT1 antibodies (Abcam, ab12193) were of ChIP grade and were purchased from Abcam. An anti-histone H3ac (pan-acetyl) antibody (pAb) (cat. no. 39139) and an anti-histone H4ac (pan-acetyl) antibody (pAb) (cat. no. 39243) were purchased from Active Motif.
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6

Immunofluorescence Analysis of PPARγ in 4T1 Cells

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For immunofluorescence analysis, 4T1 cells were washed twice with PBS, fixed in 4% paraformaldehyde, and then incubated with anti-PPARγ monoclonal antibody (ab41928, Abcam, Cambridge, UK) overnight at 4°C. Immunoreactive proteins were detected by incubating with TRITC-conjugated IgG. The nuclei were stained with DAPI (50 μg/mL) for 5 minutes. Images were assessed using a fluorescence inversion microscope system (Olympus, Tokyo, Japan).
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7

Adipogenesis Pathway Protein Analysis

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Antibodies against β-actin (#4967), AMPKα (#5832), and phospho-AMPKα at Thr172 (#2535) were purchased from Cell Signaling Technology (Danvers, MA, USA). Antibodies against FABP4 (ab92501), PPARγ (ab41928), PGC1α (ab54481), PRDM16 (ab106410), UCP1 (ab10983), and PPARα (ab3484) were purchased from Abcam (Cambridge, UK). Goat anti-rabbit IgG HRP (A0208) and goat anti-mouse IgG HRP (A0216) secondary antibodies were bought from Beyotime Institute of Biotechnology (Haimen, Jiangsu, China).
Insulin (91077C), indomethacin (I7378), dexamethasone (D4902), PA (P4060), 3-isobutyl-1-methylxanthine (I5878), triiodothyronine (T3) (I2877), DMSO (D2650), Polybrene (H9268) and Oil-Red O (O0625) were purchased from Sigma (St Louis, MO, USA). DMEM (11960–044) and Pierce™ ECL Western Blotting Substrate (#32109) were purchased from Thermo Fisher Scientific (Waltham, MA, USA). GW6471 (4618) and SR59230A (1511) were purchased from Tocris Bioscience (Avonmouth, Bristol, UK). Mito Stress Test Kit (103015–100) was purchased from Agilent Technologyies (Wilmington, USA).
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8

Histological Analysis of Cartilage

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Cartilage samples were fixed with 10% neutral buffered formalin (NBF) for 24 h and decalcified using 0.5 M ethylenediaminetetraacetic acid (EDTA) solution for a week. After paraffin embedding, blocks were cut at 5 μM thickness and stained with safranin O. For immunohistochemical analysis, deparaffinized sections were incubated with primary antibodies overnight at 4 °C in a humidified chamber. Sections were developed using ImmPACT DAB (Vector Laboratories, #SK‐4105). The following antibodies were used for immunohistochemical analysis: PPARγ (1:100 dilution, Abcam, #ab41928), IL-1β (1:100 dilution, Abcam, #ab9722), Bodipy (1:50 dilution, Thermo Fisher Scientific), and horseradish peroxidase (HRP)-conjugated goat anti-rabbit IgG (1:200 dilution, Enzo Life Sciences, #ADI‐SAB‐300).
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9

Quantifying Bone Cell Activity

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The left distal femur was embedded in olefins for subsequent histological and immunohistochemical analysis after completing the microstructure of bone investigation. Hematoxylin and eosin staining was used to examine the morphology of trabecular bone tissue. Additionally, osteocalcin staining (OCN) (ab41928; Abcam Biotechnology, MA, USA; the dilution ratio is 1:100) was utilized to assess the activities of osteoblast, and TRAP staining (Sigma-Aldrich, St. Louis, MO, USA) was used to assess the osteoclast activity. In semiquantitative immunohistochemistry analysis, we captured four distinct images at 400 × magnification using Image Pro Plus software (Media Cybernetics, MD, USA) for each slide. The number of positive cells was quantified by counting them on each bone surface (BS), and staining intensity was evaluated using the integrated optical density (IOD/area, mean density) of each positive cell area.
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10

Adipose Tissue Protein Analysis of Nob3.14 Mice

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Adipose tissue of Nob3.14 mice were homogenized in TES buffer (20 mM TrisHCl, 1 mM EDTA, 8.7% sucrose, pH 7.4, supplemented with protease inhibitor cocktail). Proteins were separated by SDS-PAGE, transferred to a PVDF membrane (Immobilon-P Membrane, Merck Milipore, Darmstadt, Germany) and targeted proteins were detected by ECL Prime Detection Reagent (GE Healthcare Europe GmbH, Freiburg, Germany) using the FUSION-SL4 advanced chemiluminescence system (Peqlab Biotechnologie GmbH, Erlangen, Germany). Primary antibodies against PPARγ (ab41928, Abcam, Cambridge, UK), pHSL (#4139S, Cell Signaling, Beverly, MA, USA), tHSL (#4107S, Cell Signaling), β- ACTIN (A3854, Sigma-Aldrich, St. Louis, USA), and appropriate horseradish peroxidase-labeled secondary antibodies (Dianova, Hamburg, Germany) were applied.
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