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29 protocols using z lehd fmk

1

Measuring Apoptosis in PC12 Cells

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For detection of cell apoptosis, lentiviral-transduced PC12 cells were collected and incubated with 1 μg/ml Annexin V-Alexa 647 (Abcam, US) and 2.5 μg/ml propidium iodide (PI, Sigma-Aldrich, US) for 30 min at room temperature, and then analyzed using a BD FACSCanto II cytometer (Becton Dickinson). Specific inhibitors of caspase-3 (Ac-DEVD-CMK, Santa Cruz Biotechnology, US), caspase-8 (Z-LEHD-FMK, Abcam, US) and caspase-9 (Z-LEHD-FMK, Abcam, US) were used to confirm the assay specificity.
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2

Caspase Inhibition Modulates Lobocrassin B Cytotoxicity

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The cells were seeded into 24-well plates at 2 × 104 cells/well and were grown overnight and then pre-treated with inhibitors of caspase-3 (Z-DEVD-FMK, 50 µM, BioVision, San Francisco, CA, USA), caspase-8 (Z-IETD-FMK; 50 µM, San Francisco, CA, USA), and caspase-9 (Z-LEHD-FMK; 50 µM, San Francisco, CA, USA) for 2 h. Cells were then treated with 5 μM Lobocrassin B for 24 h. The cell viability were examined by MTT assay.
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3

Caffeine-Mediated Cell Growth Inhibition

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Caffeine (Sigma-Aldrich; Merck KGaA, Darmstadt, Germany) was dissolved in RPMI-1640 and then added to the culture medium. The cell growth inhibitor 5-fluorouracil (5-FU; Sigma-Aldrich; Merck KGaA), which was used to evaluate the inhibitory effects of Caffeine on cell proliferation, was dissolved in the culture medium. Cells treated with Caffeine were considered the experimental group, cells treated with 5-FU were considered the control evaluation group and cells treated with equal amounts of RPMI-1640 plus 5% fetal bovine serum were considered the normal control group. Two inhibitors, Z-LEHD-FMK (a specific inhibitor of caspase-9) and Z-DEVD-FMK (a specific inhibitor of caspase-3), were obtained from BioVision, Inc. (Milpitas, CA, USA).
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4

Apoptotic Pathway Modulation in EC109 Cells

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EC109 cells were seeded at 4×105 cells/well in 6-well plates and incubated for 24 h until adherent. Next, the cells were treated with JD or Oridonin at 15 μM and 30 μM, with control, which was left untreated for 24 h. After drug treatment, adherent and non-adherent cells were harvested, and the Annexin V-FITC Apoptosis Detection Kit (Biovision, San Francisco, USA) was used according to the manufacturer’s protocol. Briefly, cells were washed with ice-cold PBS, resuspended in binding buffer containing Annexin V-FITC and propidium iodide, and incubated for 30 min at 37°C in the dark prior to analysis using a flow cytometer. Cells that were Annexin V-positive only and both Annexin V- and PI-positive were considered early and late apoptosis cells, respectively. Both the early and late apoptotic cells were included in the total number of apoptotic cells. All experiments were performed in triplicate.
For inhibition of Caspase-8 and Caspase-9, we used the Caspase-8 inhibitor, Z-IETD-FMK (Biovision, San Francisco, USA) and Caspase-9 inhibitor, Z-LEHD-FMK (Biovision, San Francisco, USA). EC109 cells were treated with Z-IETD-FMK or Z-LEHD-FMK 2 h before the addition of JD for 24 h. After drug treatment, adherent and non-adherent cells were harvested, stained with the Annexin V-FITC Apoptosis Detection Kit, and detected using flow cytometry. All experiments were performed in triplicate.
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5

Apoptosis Induction Assay Protocols

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Tunicamycin and thapsigargin were purchased from Sigma and resuspended in DMSO. Tunicamycin was used at 0.1 µg/ml, and thapsigargin was used 0.1 µM, according to previous studies [15] (link), [37] (link). CD95 and camptothecin were purchased from BD Pharmingen and used at 5 µM per manufacturer's protocol. Caspase Inhibitor VI (Z-VAD-FMK) that inhibits all caspases was purchased from Calbiochem. Caspase-8/FLICE inhibitor (Z-IETD-FMK), Caspase-9/Mch6 inhibitor (Z-LEHD-FMK) and Caspase-12 inhibitor (Z-ATAD-FMK) were purchased from Biovision. All caspase inhibitors were dissolved in DMSO and kept at 2 mM as 1000X stock solution. For cell treatments, the aforementioned chemicals were diluted directly in corresponding media and filtered for sterile conditions.
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6

Caspase Inhibitors Modulate VPA-Induced Apoptosis

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Caspase inhibitors were used to block caspase expression. Briefly, HepG2 cells were induced by 3.0 mmol/l VPA combined with 40 μmol/l caspase 3 inhibitor Z-DEVD-FMK, caspase 8 inhibitor Z-IETD-FMK and caspase 9 inhibitor Z-LEHD-FMK, respectively (BioVision, Inc.). Apoptosis was detected using the aforementioned method following 48 h. Cells induced by VPA alone were used as the positive control, and normal control cells were cultured with culture medium.
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7

Caspase Inhibition in ISO-Induced Apoptosis

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In order to assess whether the apoptotic effects of ISO were dependent on caspases, A549 cells were incubated with caspase-9 inhibitor Z-LEHD-FMK (BioVision, San Francisco, CA, USA) or caspase-3/7 inhibitor Z-DEVD-FMK (R&D Systems, Minneapolis, MN, USA) for 2 h followed by treatment of the cells with ISO for 48 h and subsequent flow cytometric cell cycle analysis. Following the above treatments, cells were harvested and washed in PBS. Cells were fixed in 1 ml cold 70% ethanol for 30 min on ice. Cells were pelleted at by centrifugation at high speed and the supernatant was discarded. Following two washes with PBS, the cells were incubated with 50 μl RNAse A solution to remove any RNA. Subsequently, 400 μl PI solution per 1×106 cells was added and mixed. Cells were incubated for 10 min at room temperature and subjected to flow cytometric analysis (FACS Influx SE), for which at least 10,000 events were observed.
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8

Cell Death Mechanisms in LPS Exposure

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Heparinized human blood samples (350 μL) were pre-incubated with one of the following compounds for 1 hour: IM-54 (Enzo Life Sciences), Wortmanin, Genistein, Tyrphostin, PD098059, Necrostatin-5, Z-VAD-FMK, AZD7762, Catalase, Tiron, Acetovanillone (Sigma), BAPTA/AM, YVAD-CHO, NS3694, Thapsigargin (Calbiochem), Z-IETD-FMK, Z-WEHD-FMK, Z-LEVD-FMK, Z-LEHD-FMK (BioVision), Z-YVAD-FMK (Santa Cruz). Concentrations were utilized according to previous reports and standardized to our conditions for optimal inhibitory performance. After treatment with the inhibitory compounds, samples were incubated with Br-LPS (1.3 pmol/mL) for 2 hours. Samples were further processed and analyzed by cytometry for cell death with Annexin V as described above.
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9

Apoptosis Pathway Inhibition Evaluation

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ABT-737, z-VAD-FMK, z-DEVD-FMK, and z-LEHD-FMK were obtained from BioVision. Trolox and CTSI (cathepsin inhibitor) were obtained from Santa Cruz. E-64, chloroquine, and N-acetylcysteine were obtained from Sigma-Aldrich.
The antibodies used in this study are as follows: caspase 9 (Cat. #9508; Cell Signaling Technology), cathepsin B (Cat. #ab58802; Abcam), Bcl-2 (Cat. #ab692; Abcam), and Bcl-xL (Cat. #ab77571; Abcam).
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10

Transfection of Human Melanoma and Kidney Cells

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Human melanoma cell line A7 (45 (link)) and human embryonic kidney cell line 293T (46 (link)) were cultured in high-glucose Dulbecco’s modified Eagle’s (DME) medium (11965084, Thermo Fisher Scientific) supplemented with 10% fetal bovine serum (10437028, Thermo Fisher Scientific). All transfection experiments were conducted using Lipofectamine 2000 transfection reagent (11668019, Thermo Fisher Scientific) according to the manufacturer’s instructions. Typically, A7 cells (1.5 × 105 cells/well) and 293T cells (8 × 105 cells/well) were seeded in 6-well culture plates a day before transfection and were transfected with 1 μg of plasmid DNA (mixed with 2.5 μl of Lipofectamine 2000) and 3 μg of plasmid DNA (mixed with 7.5 μl of Lipofectamine 2000), respectively. The concentrations of the caspase-9 inhibitor Z-LEHD-FMK (1149-5, BioVision) and the caspase-8 inhibitor Z-IETD-FMK (1148-5, BioVision) used in the study were 100 μM or 200 μM.
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