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43 protocols using cm1800

1

Histopathological Liver Assessment Protocol

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Formalin-fixed and alcoholic dehydrated liver sections were embedded in paraffin, cut into 5 μm sections, and stained with H&E. The sectioned tissues were examined for morphological analysis and histological scoring of steatosis, hepatocellular ballooning, and lobular inflammation by light microscopy [31 (link)]. To assess lipid accumulation, frozen liver specimens were cut into 10 μm sections using a cryostat (LEICA CM1800) and then fixed and stained with ORO stain [32 (link)]. Images were taken randomly from each tissue section using XSZ-07 series of a biological microscope (China) and Apex Minigrab (UK). The ORO-stained sections were automatically analyzed using Image J (https://imagej.nih.gov/ij).
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2

Histological Assessment of Liver and Adipose Tissue

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A portion of the liver and adipose tissue was fixed with a 10-fold volume of 10% formalin. Thereafter, the tissues were embedded in paraffin blocks and sectioned using a cryo-cut microtome (Leica CM1800, Wetzler, Germany) with a thickness of 3–4 μm. The sections were stained with hematoxylin and eosin (H&E) and captured using an optical microscope (ZEISS Axio Imager 2, Carl Zeiss, Oberkochen, Germany). The liver histological changes were assessed (by a blinded observer) in three different randomly selected 20X fields for each experimental rat. Histological scores were measured using Kleiner’s histological scoring system [55 (link)] by quantifying the degree of inflammatory cell infiltration, steatosis, and balloon cells. Adipocyte size (μm2) and the number of crown-like structures (CLS) were determined in three different randomly selected 20X fields for each experimental rat. Adipocyte size and CLS number were measured using an Image J (NIH, Bethesda, MD, USA).
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3

Immunofluorescence Analysis of Midbrain Neurons

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The mice were anesthetized with pentobarbital sodium (100 mg/kg, i.p.) and transcardially perfused with 50 mL of 0.01 M phosphate buffer saline (PBS, pH 7.4) and thereafter fixed with 4% paraformaldehyde (pH 7.4). The brains were then collected and subsequently immersed in 0.1 M PB containing 30% sucrose at 4 °C. Coronal sections via the SNr area with a thickness of 30 μm were sectioned on a cryostat (Leica CM1800; Heidelberg, Germany). Sections were incubated in a blocking PBS buffer containing 0.3% Triton X-100 and 0.05% sodium azide, 10% bovine serum albumin for 30 min at room temperature. The primary antibodies included mouse anti- Mouse anti-GAD67 (GAD1) (1:100, Cat. #ab26116, Abcam), Rabbit anti-GAD65 (GAD2) (1:50, Cat. #5843 s, CST), Rabbit anti-Parvalbumin (1:200, Cat. #80561 s, CST), Rabbit anti-vGlut1 (1:500, Cat. #a12879, Abclonal), Rabbit anti-GFAP (1:200, Cat. #12389 s, CST), and Rabbit anti-NeuN (1:50, Cat. #ab190565, Abcam). The secondary antibodies Alexa 488-Goat anti-Mouse (1:500, Cat. #A23210, Abbkine) and Alexa 488-Goat anti-Rabbit (1:500, Cat. #A23220, Abbkine) were used, together adding DAPI (1:500, Cat. #BMD0063, Abbkine) at room temperature for 12 min. All images were taken under FV-1000 confocal fluorescence microscope. There were 3 mice in each group and at least 4 slices were taken from each brain tissue.
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4

Immunohistochemical Analysis of SK2 Channels

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Mice were transcardially perfused with 0.9% saline (10 mL/10 g), followed by 4% polyformaldehyde in phosphate buffer (10 mL/10 g) after deep anesthesia. The spinal cord (L4-S4) was isolated and fixed in 4% polyformaldehyde for 24 h and equilibrated in 30% sucrose solution prior to slice preparation at a thickness of 30 μm with a cryostat (CM1800, Leica, Germany). Selected slices were thrice rinsed with PBS for 10 min and blocked with 10% donkey serum at r/t for 2 h before incubation with anti-SK2 (1 : 150) at 4°C for 24 h. Subsequently, the slices were lavaged thrice and incubated with Alexa Fluor 594 (1 : 200) at r/t for 2 h. Images were obtained with the use of a confocal laser microscope (FV1000, Olympus, Japan).
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5

Histological Evaluation of Hepatic Lipid Deposition

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Liver sections were preserved in 10% formaldehyde solution and then immersed in paraffin. The obtained tissue was sliced into 5 μm-thick tissue blocks that were stained with hematoxylin and eosin (H&E). The obtained blocks were inspected under a light microscope, as mentioned by Kleiner et al. (2005) (link). To assess hepatic lipid deposition, 10-μm frozen liver sections were prepared using a cryostat (LEICA CM 1800), fixed, and then, stained with ORO (Green and Kehinde, 1974 (link)). Using the XSZ-107BN microscope (China) and the Apex Minigrab (UK), the obtained sections were randomly photographed and then automatically analyzed using ImageJ (https://imagej.nih.gov/ij).
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6

Colon Mucosal Barrier Immunofluorescence

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The animals under anesthesia were infused via the left ventricle with 4% paraformaldehyde in 0.01 M PBS (pH 7.4). Colon segment 5 cm proximal to anus was removed and post-fixed with the same fixative for 12 hours, and cryoprotected in 30% sucrose in PBS for at least 24 hours at 4 °C. The colon with mucosal injure was sliced in 10 μm thick using a cryostat (CM1800; Leica, Bensheim, Germany). To evaluate the cell junction in colonic mucosa, immunofluorescence staining of occludin and claudin-5 was performed. For this purpose, slices were incubated with the following primary antibodies overnight at 4 °C: mouse anti-claudin-5 (1: 100, Invitrogen, Camarillo, CA, USA), mouse anti-occludin (1: 50, Invitrogen, Camarillo, CA, USA). After washing, sections were incubated with dylight 549-labeled goat anti-mouse IgG (KPL, Gaithersburg, MD, USA) for 2 hours at room temperature. Hoechst 33342 (BD Biosciences Pharmingen, San Jose, CA, USA) was applied to stain nucleus. F-actin in colonic tissues was stained with phalloidin (1: 40, Abcam, Cambridge, UK). All sections were photographed under a laser scanning confocal microscope (TCS SP5, Leica, Mannheim, Germany).
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7

Visualizing Endophytic Bacterial Colonization

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Sterilized rice seedlings inoculated with wild-type or Z67-sbtI/sbtR mutant strains were grown as described above. At eight days post-inoculation (PI), plants were harvested and cuts performed both on roots and aerial parts using scalpel (thick cuts) or cryostat (Leica CM1800) (thin cuts). Cuts were stained by incubating them for 15 min in a wet chamber in the presence of 12 μM Syto9 Stain (Life Technologies), a DNA intercalating agent. Cuts were mounted in slides and acquisition of 3D images was performed by a confocal laser scanning microscopy (CLSM) Olympus BX-61 direct FV300, 100× immersion objective, N.A. 1.35 and 488 nm/520 nm excitation/emission wavelength. Images obtained in xy-axis of 1024 × 1024 pixels and Z-stacks acquired with a step size of 0.3 μm were reconstructed using Volocity 3D Image Analysis Software (Perkin Elmer). Experiments were carried out with three tubes as biological replicates, each containing three plants, and four cuts per plant were observed.
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8

In Situ Detection of miRNA in Mouse Embryos

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All animal experiments were approved by the ethics committee of Kyushu University Animal Experiment Center (protocol no. A30-100-0) and all procedures were performed in accordance with the relevant guidelines and regulations. E14 mice were euthanized by anesthesia and the embryos were immediately dissected. Embryo heads were fixed with 4% paraformaldehyde in phosphate-buffered saline (PBS) for 16 hours at 4 °C, then incubated in gradient sucrose solutions in PBS for 12–24 hours and embedded in OCT compound (Sakura Finetek). The heads were then sectioned into 10-μm slices with a cryostat (CM 1800; Leica) and permeabilized with 10 μg/ml of proteinase K (Roche Diagnostics) for 10–20 minutes at room temperature. For post-fixation and prehybridization, the specimens were hybridized with 20 nM of miRCURY LNA, including a detection probe (1 nmol), then 5‘-DIG and 3‘-DIG labeled (Exicon) at 51 °C overnight. Non-specific immuno-reactions were blocked with 10% normal sheep serum (Sigma), then the specimens were incubated with an anti-DIG alkaline phosphatase-conjugated antibody (Roche Diagnostics) overnight at 4 °C. The color reaction was developed using nitro blue tetrazolium (NBT) and 5-bromo-4chloro-3-indolyl phosphate (BCIP) as the substrates (Roche Diagnostics).
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9

Histological Analysis of Liver Tissue

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Liver tissues of TGF-β gene-transferred mice were embedded in an optimal cutting temperature compound (Miles Inc., Elkhart, IN) and frozen in liquid nitrogen for following experiments. Five mm of cryosections were performed by using cryostats (Leica CM 1800, Nussloch, Germany). Histology and immunohistochemistry were performed as described previously [5 (link)]. For the detection of α-SMA, a mouse monoclonal antibody (Santa Cruz) was used. Signals were visualized by anti-mouse IgG, horseradish peroxidase labeled secondary antibody, and 3, 3'-diaminobenzidine substrate (Vector Laboratories, Burlingame, CA). All sections were viewed under a microscope (Leica Mikrosysteme Vertrieb GmbH, Bensheim, Germany).
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10

Nissl Staining of Olfactory Bulbs

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For nissl staining, mice at PD14, PD28 and PD42 in each group were deeply anesthetized with sodium pentobarbital (50 mg/kg) and then perfused with 20 mL 0.01 M phosphate-buffered saline (PBS, pH = 7.4), followed by 100 mL 4% paraformaldehyde in 0.1 M phosphate buffer solution (PB, pH = 7.4). Then the Olfactory Bulbs (OB) were removed and post-fixed in the same fixative for 3 h and then cryoprotected for 24 h at 4°C in 0.1 M PB containing 30% sucrose. Coronal sections (30 μm) were cut in a freezing microtome (Leica CM1800, Heidelberg, Germany) at −20°C and collected in 0.01 M PBS. For staining, the sections were mounted on gelatin coated glass slides. When dried, the sections were defatted in 75% ethanol at 37°C overnight. Then the sections were stained for 10 min in 0.1% cresyl violet solution at RT, after rinsing with water, sections were incubated with 70% ethanol (3 s), 80% ethanol (3 s), 90% ethanol (3 s), 95% ethanol (3 s), absolute ethanol I (3 s) and absolute ethanol II (5 min) and then with xylene I (10 min) and xylene II (30 min). Sections were observed under an optical microscope after mounting with permount.
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