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8 protocols using nucleosil si 300 silica

1

Analytical Methods for Warfarin and Nateglinide

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The R-warfarin (≥ 97% pure), L-tryptophan (≥ 98%), HSA (fatty acid free, ≥ 96%), sodium nitrate, nateglinide (≥ 98%), sodium azide (>95%), and D-(+)-glucose (99.5%) were from Sigma-Aldrich (St. Louis, MO, USA). Repaglinide (≥ 99.5%) was purchased from Santa Cruz Biotech (Dallas, TX, USA). The Nucleosil Si-300 silica (300 Å pore size; 7 μm particle size) was obtained from Macherey-Nagel (Duren, Germany). A fructosamine assay kit was purchased from Diazyme Laboratories (Poway, CA, USA). Reagents for the micro bicinchoninic acid (BCA) protein assay were from Pierce (Rockford, IL, USA). Purified water from a Milli-Q-Advantage A 10 system (EMD Millipore, Billerica, MA, USA) was used to make all aqueous mobile phases and solutions for this work. In addition, GNWP nylon membranes (0.20 μm) purchased from Fisher Scientific (Pittsburgh, PA, USA) were used for the filtration of all aqueous solutions and mobile phases.
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2

Purification and Characterization of SHBG

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The HSA (Cohn fraction V, ≥ 96% pure, essentially fatty acid free,) and testosterone were from Sigma (St. Louis, MO, USA). The purified human SHBG (≥ 90%, batch number 060613) was obtained from AbD Serotec (Raleigh, NC, USA). The reagents for the bicinchoninic acid (BCA) protein assay were from Pierce (Rockford, IL, USA). The Nucleosil Si-300 silica (7 μm particle diameter, 300 A pore size) was from Macherey Nagel (D ren, Germany). All buffers and aqueous solutions were prepared using water from a NANOpure system (Barnstead, Dubuque, IA, USA) and were passed through Osmonics 0.22 μm nylon filters from Fisher Scientific (Pittsburgh, PA, USA) to sterilize these solutions by removing microorganisms and particulate matter (Note: these conditions have been found to suitable in previous work using HSA columns for drug-protein binding studies,26 (link)–30 (link) although the use of an autoclave to sterilize glassware and buffers or aqueous solutions has also been employed in related studies).27 (link),31 (link)
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3

Bovine Liver Glycogen and Serum Protein Binding

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The glycogen (from bovine liver, type IX; total glucose ≥ 85%; catalog no. G0885), AGP (from pooled human serum, lyophilized; ≥ 99% pure; catalog no. G9885), carbamazepine, R-propranolol, S-propranolol, and R-warfarin were purchased from Sigma-Aldrich (St. Louis, MO, USA). The Nucleosil Si-300 silica (particle size, 7 μm; pore size, 300 Å) was from Macherey-Nagel (Düren, Germany). All buffers and aqueous solutions were prepared using water from a Nanopure system (Barnstead, Dubuque, IA, USA) and were filtered using 0.20 μm nylon filters from Millipore (Billerica, MA, USA).
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4

Glycogen Purification and Characterization

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The HSA (essentially fatty acid free, ≥ 96% pure), Con A (type V, lyophilized powder, highly purified), glycogen (bovine liver type IX, total glucose ≥ 85 %, dry basis), racemic warfarin (purity ≥ 98%), 4-methylumbellipheryl α-D-mannopyranoside (MUM, purity ≥ 96%) and 4-methylumbellipheryl α-D-galactopyranoside (MUGA, purity ≥ 98%) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Nucleosil Si-300 silica (7 μm particle diameter, 300 Å pore size) was obtained from Macherey Nagel (Duren, Germany). All other chemicals were of the purest grades available. Vivaspin 6 ultrafiltration tubes (30 kDa cutoff; Sartorius, Gottingen, Germany) were used for purification of the oxidized glycogen. All buffers and aqueous solutions were prepared using water from a Nanopure system (Barnstead, Dubuque, IA, USA). Buffers were filtered using 0.20 μm GNWP nylon membranes from Fisher Scientific (Pittsburgh, PA, USA) and were degassed by sonication under vacuum for at least 30 min prior to use.
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5

Affinity Chromatography of Protein-Ligand Interactions

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The R‐warfarin (≥ 97% pure), L‐tryptophan (≥ 98%), HSA (fatty acid‐free, ≥ 96%), sodium nitrate, nateglinide (≥ 98%), sodium azide (> 95%), and D‐(+)‐glucose (99.5%) were from Sigma‐Aldrich (St. Louis, MO, USA). Repaglinide (≥ 99.5%) was purchased from Santa Cruz Biotech (Dallas, TX, USA). The Nucleosil Si‐300 silica (300 Å pore size; 7 μm particle size) was obtained from Macherey‐Nagel (Duren, Germany). A fructosamine assay kit was purchased from Diazyme Laboratories (Poway, CA, USA). Reagents for the micro bicinchoninic acid protein assay were from Pierce (Rockford, IL, USA).  Purified water from a Milli‐Q‐Advantage A 10 system (EMD Millipore, Billerica, MA, USA) was used to make all aqueous mobile phases and solutions for this work. In addition, GNWP nylon membranes (0.20 μm) purchased from Fisher Scientific (Pittsburgh, PA, USA) were used for the filtration of all aqueous solutions and mobile phases.
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6

Affinity Purification of Glycoproteins

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The AGP (from pooled human plasma, product no. G9885, ≥ 99% pure), L-fucose (> 99%), (3-glycidoxypropyl)trimethoxysilane (≥ 98%), Con A (product C7275, type V, highly purified), human serum albumin (HSA, product A1887, 96%, fatty acid free), ovalbumin (≥ 98%), p-nitrophenyl α-D-mannopyranoside (p-NP-α-D-Man) and p-nitrophenyl α-L-fucopyranoside (p-NP-α-L-Fuc) were purchased from Sigma-Aldrich (St Louis, MO, USA). The AAL (product L-1390, homogeneous by SDS-PAGE) was purchased from Vector Laboratories (Burlingame, CA, USA). Nucleosil Si-300 silica (300 Å pore size, 5 μm particle diameter) was purchased from Macherey-Nagel (Duren, Germany). A micro BCA assay kit was obtained from Thermo Fisher Scientific (Waltham, MA, USA). All aqueous solutions and samples were prepared using water from a Milli-Q Advantage A10 Water Purification System (EMD Millipore Corporation, Billerica, MA, USA).
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7

Protein-Ligand Interaction Assay Protocol

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The glibenclamide (≥ 99% pure), glimepiride (≥ 99%), glipizide (≥ 96%), and HSA (Cohn fraction V, essentially fatty acid free, ≥ 96%) were from Sigma (St. Louis, MO, USA). Nucleosil Si-300 silica (7 μm particle diameter, 300 Å pore size) was acquired from Macherey Nagel (Dűren, Germany). The components for the bicinchoninic acid (BCA) protein assay were purchased from Pierce (Rockford, IL, USA). All aqueous solutions and buffers were prepared using water that was generated by a NANOpure system (Barnstead, Dubuque, IA, USA) and were passed through Osmonics 0.22 μM nylon filters from Fisher Scientific (Pittsburgh, PA, USA).
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8

Analytical Procedures for Biomolecule Characterization

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The HSA (Cohn fraction V, essentially
fatty acid free, ≥96% pure), acetohexamide, chlorpromazine,
gliclazide, tolbutamide, racemic verapamil, and racemic warfarin were
obtained from Sigma (St. Louis, MO, U.S.A.). The reagents for the
bicinchoninic acid (BCA) protein assay were from Pierce (Rockford,
IL, U.S.A.). The Nucleosil Si-300 silica (7 μm particle diameter,
300 Å pore size) was purchased from Macherey Nagel (Dűren,
Germany). All buffers and aqueous solutions were prepared using water
from a Nanopure system (Barnstead, Dubuque, IA, U.S.A.) and were passed
through Osmonics 0.22 μm nylon filters from Fisher (Pittsburgh,
PA, U.S.A.)
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